Non-Coding RNA Search

Ss1.1-MPL-MPL384_6_D04.5

Sequence:


               
               ATAAACATATCCTGTATCAGAATAAAAATGTGTGTTATATATTTGAAATCATGCATGGTA
AGGAGTGTGTTTAAATTGTTATAAACAATAATGCATCATAAAAGACCATGCTGATCTTGT
GTAACTAAGTACTATGAGTGAATTTGGTTGGTATTTGATGTGGTGCAGCTCACATGTTTA
CACACTTGGTGCCCTAATTTCCCCTGAGGGAATCGCCTTTTAAGTGGTCCTTACAGTGGT
GTTTTAAGGTTACTTTATCACAAAAGCTCCTTGTTTTTTGACTTCTGCACTTAAATTTTT
TTTTTTAATATCATGATGATGGTACAGTTTTCTCTGTTGCTTCTAGCTAAGGGTTTTCAG
TCCACCAGTAACTAAGATCAAATGTTATTAAATGTTCATCTTACCATCCTTCTGTATATA
CTGAATTTTTCCTGTCATTTAGCACTGTGCTGCTTCCATCTGTCTTAATGCTGGCATTAA
GATCATGAGCCCTTTTTCTCCAGTAGTGCAGGCTTTGAAGATTACTTTTATTAAGTTATT
GATGCAATTTGATATTTTTCCATAATCTATATTTAAACAAAATTACATCATTGCATCATT
TTTTCTAAATTCATCTCCTTTAAAACTTGCCTTAAGCTACCAAATTGCTTTTGCCACCAT
TAGCCATATTGTGTGTTTGTATGTTTAATTTACTTTCACAATAAACTTCTGTGTAGTGAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAACATATCCTGTATCAGAATAAAAATGTGTGTTATATATTTGAAATCATGCATGGTA
AGGAGTGTGTTTAAATTGTTATAAACAATAATGCATCATAAAAGACCATGCTGATCTTGT
GTAACTAAGTACTATGAGTGAATTTGGTTGGTATTTGATGTGGTGCAGCTCACATGTTTA
CACACTTGGTGCCCTAATTTCCCCTGAGGGAATCGCCTTTTAAGTGGTCCTTACAGTGGT
GTTTTAAGGTTACTTTATCACAAAAGCTCCTTGTTTTTTGACTTCTGCACTTAAATTTTT
TTTTTTAATATCATGATGATGGTACAGTTTTCTCTGTTGCTTCTAGCTAAGGGTTTTCAG
TCCACCAGTAACTAAGATCAAATGTTATTAAATGTTCATCTTACCATCCTTCTGTATATA
CTGAATTTTTCCTGTCATTTAGCACTGTGCTGCTTCCATCTGTCTTAATGCTGGCATTAA
GATCATGAGCCCTTTTTCTCCAGTAGTGCAGGCTTTGAAGATTACTTTTATTAAGTTATT
GATGCAATTTGATATTTTTCCATAATCTATATTTAAACAAAATTACATCATTGCATCATT
TTTTCTAAATTCATCTCCTTTAAAACTTGCCTTAAGCTACCAAATTGCTTTTGCCACCAT
TAGCCATATTGTGTGTTTGTATGTTTAATTTACTTTCACAATAAACTTCTGTGTAGTGAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               432-551, + strand, RNAz p=0.773955

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               432-551, + strand, RNAz p=0.773955

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001755, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001755, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr18 (28299776-28300494)
               

               
               1-720, gnl|Hg17|chr16 (65691747-65692460)
               

               
               1-720, gnl|Mm7|chr8 (103815993-103816622)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr18 (28299776-28300494)
               

               
               1-720, gnl|Hg17|chr16 (65691747-65692460)
               

               
               1-720, gnl|Mm7|chr8 (103815993-103816622)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               sme (0.305437)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               sme (0.305437)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	1-720, gnl\|bosTau2\|chr18 (28299776-28300494)
	1-720, gnl\|Hg17\|chr16 (65691747-65692460)
	1-720, gnl\|Mm7\|chr8 (103815993-103816622)

	amn (0.417711)
	sme (0.305437)
	mga (0.160205)
	isp (0.150376)
	lyg (0.133103)
	ret (0.128733)
	thg (0.126791)
	tra (0.123092)