Non-Coding RNA Search

Ss1.1-MPL-MPL384_6_E24.5

Sequence:


               
               AGTGGCTTGACCTCGACTCTAAGAGCAAAAGAAACCCCACGGAGCAGGTAACTAAGCCGG
CTCTACAGTGAGACGTGCGAGGGAGACAGAGGCCAGGTCCTCAGGACCTGCGCTGGGCCT
GCCTTGACCGTGAGGCGTGCAGCCCTTACTTGGAGATTTAACAATGTGGGAGAGCTGTTT
CAACATGTCTGAGGGGAACAGAACCCGGAGGCAGCTTAACTCAGGGTAACCAGGAGCCAA
CAGCAACTCCTGATGCAATGGTTCAGCCTTTTACTACAATCCCATTTCCGCCACCTCCAC
AGAATGGAATTCCCGCCGAGTATGGAGTGCCACACACTCAGGACTATGCCGGCCAGGCGA
GAGAGCATAACCTGACCCTCTACGGCAGCACGCAAGCCCATGGGGAGCAGAGTATCAACT
CCCCCAGCACACAGAACGGATCTCTGACGACAGAAGGGGGCGCACAGACAGACGGCCAGC
AGTCACAGACACAAAGCAGTGAAAATTCAGAGAGTAAATCTACCCCGAAACGACTGCATG
TCTCTAATATTCCTTTCCGCTTCCGGGACCCTGACCTCCGGCAGATGTTTGGGCAGTTTG
GCAAAATCCTAAATGTAAAAATAATCTTTAATGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGCTTGACCTCGACTCTAAGAGCAAAAGAAACCCCACGGAGCAGGTAACTAAGCCGG
CTCTACAGTGAGACGTGCGAGGGAGACAGAGGCCAGGTCCTCAGGACCTGCGCTGGGCCT
GCCTTGACCGTGAGGCGTGCAGCCCTTACTTGGAGATTTAACAATGTGGGAGAGCTGTTT
CAACATGTCTGAGGGGAACAGAACCCGGAGGCAGCTTAACTCAGGGTAACCAGGAGCCAA
CAGCAACTCCTGATGCAATGGTTCAGCCTTTTACTACAATCCCATTTCCGCCACCTCCAC
AGAATGGAATTCCCGCCGAGTATGGAGTGCCACACACTCAGGACTATGCCGGCCAGGCGA
GAGAGCATAACCTGACCCTCTACGGCAGCACGCAAGCCCATGGGGAGCAGAGTATCAACT
CCCCCAGCACACAGAACGGATCTCTGACGACAGAAGGGGGCGCACAGACAGACGGCCAGC
AGTCACAGACACAAAGCAGTGAAAATTCAGAGAGTAAATCTACCCCGAAACGACTGCATG
TCTCTAATATTCCTTTCCGCTTCCGGGACCCTGACCTCCGGCAGATGTTTGGGCAGTTTG
GCAAAATCCTAAATGTAAAAATAATCTTTAATGAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IP88_XENLA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IP88_XENLA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               222-341, - strand, RNAz p=0.819374

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               222-341, - strand, RNAz p=0.819374

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               222-449, gnl|bosTau2|chr5 (44221570-44221343)
               

               
               222-449, gnl|Hg17|chr22 (34530554-34530327)
               

               
               222-449, gnl|Mm7|chr15 (77215896-77215669)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-449, gnl|bosTau2|chr5 (44221570-44221343)
               

               
               222-449, gnl|Hg17|chr22 (34530554-34530327)
               

               
               222-449, gnl|Mm7|chr15 (77215896-77215669)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	222-449, gnl\|bosTau2\|chr5 (44221570-44221343)
	222-449, gnl\|Hg17\|chr22 (34530554-34530327)
	222-449, gnl\|Mm7\|chr15 (77215896-77215669)