Non-Coding RNA Search

Ss1.1-MPL-MPL384_7_J20.5

Sequence:


               
               GAACGCTGGTGGTCCACTTAGTGTTTAGAAAACCCCGTCGTTTATTGGTTCGTCACCTGT
GTACACGGGCACAGCATTAGGAACTGTGGAATCAAACTCCAACGAGATCGTCCCTGCCCT
CTGGAGGTGAGAGACTACAAGCAAATCTGTTTGTAGAATCATCTTCATGTTTCCAAACTT
CTAAAACAAAACAGCCAGTCTTTCTTATGCTTGAAAAATAGGTGATTCTTCGTTAGCTCT
GTTTTGAAACTGTTTCCTTTTCTTCTGAGCAACCAAGTTATGGACAAAGACTTCCTTGGA
TAAATGCTACTTTTCTTCTATGTCTCAAAGTTGGACTTTTCTCCTCTTGCTCCCCTATTT
CCCAGTAATTCCCCATCTCCCCTTTTTCTTGGGAAAGGCATTGATATGGCGAAGCCTTCC
TCGTATGAGTGCTGTTGCATGAAAGGGCATTAGGGACACATGTGTTTTGCCCCAGAGATC
AAACATCGCTTTCTGGATCTCTCTCATCCGCTGGTAATCTCACCCCTTCACAGAATGCAT
CGGCACTGGTTGCTTATAAATGACGTAAAGAATCTCCTTGGATTTTAATCATGCAGCTTT
GGGAAATAAGGACAAAATATTCCAGTGAATCTGAATTATTTCTTCAAAAAATAAATGATT
AAAGTGGTACATATGTATCCTCACCAATCCCATCTCCTCAAAAGGCTTTATTAAGGTGCT
GTGACACTCAAGAGAATTTAGAACTGATGAGAAGTTAATGCTTCAGTCATTGTCACATGG
TCACATTTTAAATCAGCATGTTAAAATGTTTGCTGGCAAGAACTGCCAAACACTATAAGG
CAGTATTTGATTTCACACTTCTAAATGTGCTCCTTTAGCATTCATTCCTTGAAGTAAAAA
ATCCAAAAAAAAAAATGTCAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACGCTGGTGGTCCACTTAGTGTTTAGAAAACCCCGTCGTTTATTGGTTCGTCACCTGT
GTACACGGGCACAGCATTAGGAACTGTGGAATCAAACTCCAACGAGATCGTCCCTGCCCT
CTGGAGGTGAGAGACTACAAGCAAATCTGTTTGTAGAATCATCTTCATGTTTCCAAACTT
CTAAAACAAAACAGCCAGTCTTTCTTATGCTTGAAAAATAGGTGATTCTTCGTTAGCTCT
GTTTTGAAACTGTTTCCTTTTCTTCTGAGCAACCAAGTTATGGACAAAGACTTCCTTGGA
TAAATGCTACTTTTCTTCTATGTCTCAAAGTTGGACTTTTCTCCTCTTGCTCCCCTATTT
CCCAGTAATTCCCCATCTCCCCTTTTTCTTGGGAAAGGCATTGATATGGCGAAGCCTTCC
TCGTATGAGTGCTGTTGCATGAAAGGGCATTAGGGACACATGTGTTTTGCCCCAGAGATC
AAACATCGCTTTCTGGATCTCTCTCATCCGCTGGTAATCTCACCCCTTCACAGAATGCAT
CGGCACTGGTTGCTTATAAATGACGTAAAGAATCTCCTTGGATTTTAATCATGCAGCTTT
GGGAAATAAGGACAAAATATTCCAGTGAATCTGAATTATTTCTTCAAAAAATAAATGATT
AAAGTGGTACATATGTATCCTCACCAATCCCATCTCCTCAAAAGGCTTTATTAAGGTGCT
GTGACACTCAAGAGAATTTAGAACTGATGAGAAGTTAATGCTTCAGTCATTGTCACATGG
TCACATTTTAAATCAGCATGTTAAAATGTTTGCTGGCAAGAACTGCCAAACACTATAAGG
CAGTATTTGATTTCACACTTCTAAATGTGCTCCTTTAGCATTCATTCCTTGAAGTAAAAA
ATCCAAAAAAAAAAATGTCAGAGC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               8-614, gnl|bosTau2|chr11 (79683355-79683968)
               

               
               8-614, gnl|Hg17|chr13 (36319177-36318055)
               

               
               8-614, gnl|Mm7|chr3 (54928160-54928895)
               


               
               641-907, gnl|bosTau2|chr11 (79683969-79684235)
               

               
               641-907, gnl|Hg17|chr13 (36318030-36317772)
               

               
               641-907, gnl|Mm7|chr3 (54928913-54929129)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-614, gnl|bosTau2|chr11 (79683355-79683968)
               

               
               8-614, gnl|Hg17|chr13 (36319177-36318055)
               

               
               8-614, gnl|Mm7|chr3 (54928160-54928895)
               


               
               641-907, gnl|bosTau2|chr11 (79683969-79684235)
               

               
               641-907, gnl|Hg17|chr13 (36318030-36317772)
               

               
               641-907, gnl|Mm7|chr3 (54928913-54929129)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               liv (0.146284)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               bla (0.124347)

	8-614, gnl\|bosTau2\|chr11 (79683355-79683968)
	8-614, gnl\|Hg17\|chr13 (36319177-36318055)
	8-614, gnl\|Mm7\|chr3 (54928160-54928895)

	641-907, gnl\|bosTau2\|chr11 (79683969-79684235)
	641-907, gnl\|Hg17\|chr13 (36318030-36317772)
	641-907, gnl\|Mm7\|chr3 (54928913-54929129)