Non-Coding RNA Search

Ss1.1-MPL-MPL384_7_L13.5

Sequence:


               
               ATCGAGATGTGCCAGATTGCTGACGTCCTCATCCGCAAGACGCGCCGCCTCTCAGCCTTC
CAGCAGGGCTTCCGTCCGACAGGATCCTGGTGATCGCCATCGTGTTCCAGGTCTGCATCG
GCTGCTTCCTGTGCTACTGCCCCGGGATGCCCAACATCTTCAACTTCATGCCCATTCGGT
TCCAGTGGTGGCTGGTTCCCATGCCCTTTGGCCTCCTCATCTTCGTCTATGATGAGATCA
GGAAACTTGGAGTTCGCTGTTGCCCAGGGAGCTGGTGGGACCAGGAACTCTACTATTAGA
GGGACCATTGCCTGCAAGCCATCCTTGCATACACCACAATGGGGGGCAGGGACACACGGA
ACCCCTGGGACAGCCACCGAAACATCTGCGCAGTCAAGAGTCCCAGCCCCGCCTGTGTCT
GCTCTTGTAGCCCATAGCCCCTCAACCTTGGGGGCACACTCCCACCCCACAGAGGAGCAG
TCTCTAGGCCCAGTCTTCTGAGCTGGCCACAGGGAAGCCCCCCCAGGGTGGGAGGGCTTT
GATGGGGAGTGGGAATTAGCAGCTCCTGTGAGGTGGGTCTGTCCTTAGACTCCAGCCTAG
CAAGAGGCCTGCCTGGGGCGCTTTAGAAACACTTGTGTCTGCGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGAGATGTGCCAGATTGCTGACGTCCTCATCCGCAAGACGCGCCGCCTCTCAGCCTTC
CAGCAGGGCTTCCGTCCGACAGGATCCTGGTGATCGCCATCGTGTTCCAGGTCTGCATCG
GCTGCTTCCTGTGCTACTGCCCCGGGATGCCCAACATCTTCAACTTCATGCCCATTCGGT
TCCAGTGGTGGCTGGTTCCCATGCCCTTTGGCCTCCTCATCTTCGTCTATGATGAGATCA
GGAAACTTGGAGTTCGCTGTTGCCCAGGGAGCTGGTGGGACCAGGAACTCTACTATTAGA
GGGACCATTGCCTGCAAGCCATCCTTGCATACACCACAATGGGGGGCAGGGACACACGGA
ACCCCTGGGACAGCCACCGAAACATCTGCGCAGTCAAGAGTCCCAGCCCCGCCTGTGTCT
GCTCTTGTAGCCCATAGCCCCTCAACCTTGGGGGCACACTCCCACCCCACAGAGGAGCAG
TCTCTAGGCCCAGTCTTCTGAGCTGGCCACAGGGAAGCCCCCCCAGGGTGGGAGGGCTTT
GATGGGGAGTGGGAATTAGCAGCTCCTGTGAGGTGGGTCTGTCCTTAGACTCCAGCCTAG
CAAGAGGCCTGCCTGGGGCGCTTTAGAAACACTTGTGTCTGCGTAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61836293|ref|XP_589342.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61836293|ref|XP_589342.1|

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               79-180, gnl|bosTau2|chr18 (39566866-39566967)
               

               
               79-180, gnl|Mm7|chr7 (27662422-27662523)
               


               
               271-606, gnl|bosTau2|chr18 (39567357-39567707)
               

               
               271-606, gnl|canFam2|chr1 (120025490-120025096)
               

               
               271-606, gnl|dasNov1|scaffold_12214 (41202-41625)
               

               
               271-606, gnl|echTel1|scaffold_323482 (7520-7149)
               

               
               271-606, gnl|hg17|chr19 (40732846-40733276)
               

               
               271-606, gnl|Hg17|chr19 (40733385-40733003)
               

               
               271-606, gnl|mm7|chr7 (27663351-27663001)
               

               
               271-606, gnl|Mm7|chr7 (27662918-27663226)
               

               
               271-606, gnl|oryCun1|scaffold_206110 (7932-7644)
               

               
               271-606, gnl|rheMac2|chr19 (42043405-42043834)
               

               
               271-606, gnl|rn3|chr1 (85847686-85847343)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-180, gnl|bosTau2|chr18 (39566866-39566967)
               

               
               79-180, gnl|Mm7|chr7 (27662422-27662523)
               


               
               271-606, gnl|bosTau2|chr18 (39567357-39567707)
               

               
               271-606, gnl|canFam2|chr1 (120025490-120025096)
               

               
               271-606, gnl|dasNov1|scaffold_12214 (41202-41625)
               

               
               271-606, gnl|echTel1|scaffold_323482 (7520-7149)
               

               
               271-606, gnl|hg17|chr19 (40732846-40733276)
               

               
               271-606, gnl|Hg17|chr19 (40733385-40733003)
               

               
               271-606, gnl|mm7|chr7 (27663351-27663001)
               

               
               271-606, gnl|Mm7|chr7 (27662918-27663226)
               

               
               271-606, gnl|oryCun1|scaffold_206110 (7932-7644)
               

               
               271-606, gnl|rheMac2|chr19 (42043405-42043834)
               

               
               271-606, gnl|rn3|chr1 (85847686-85847343)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cst (0.560146)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.560146)

	79-180, gnl\|bosTau2\|chr18 (39566866-39566967)
	79-180, gnl\|Mm7\|chr7 (27662422-27662523)

	271-606, gnl\|bosTau2\|chr18 (39567357-39567707)
	271-606, gnl\|canFam2\|chr1 (120025490-120025096)
	271-606, gnl\|dasNov1\|scaffold_12214 (41202-41625)
	271-606, gnl\|echTel1\|scaffold_323482 (7520-7149)
	271-606, gnl\|hg17\|chr19 (40732846-40733276)
	271-606, gnl\|Hg17\|chr19 (40733385-40733003)
	271-606, gnl\|mm7\|chr7 (27663351-27663001)
	271-606, gnl\|Mm7\|chr7 (27662918-27663226)
	271-606, gnl\|oryCun1\|scaffold_206110 (7932-7644)
	271-606, gnl\|rheMac2\|chr19 (42043405-42043834)
	271-606, gnl\|rn3\|chr1 (85847686-85847343)