Non-Coding RNA Search

Ss1.1-MPL-MPL384_8_D20.5

Sequence:


               
               ATGACAGAATCTACTACATGGTGGCCCCATCGCCAGAAGCCATGCGGATCTGGATGGATG
TTATAGTTACTGGGGCAGAAGGTTACACTCACTTCTTGTTGTAGTGAACTGACACAACAG
TGCGCTTCAGGGCCAACTGCAATAATCTCTTCCAAGAATGAAGCCATATTCAATCCCAGG
TGGAAAGACCCAACAGACCCATTGCTTTAACTGTGTACTCAGAACTGCTTTTGTGTGAAC
AAAAGTCACTTGTAAAAGAGAAAGAAGGGGTTTTTCAGTTCAAAGCTTGACCATGAATAA
TTCAAAGCTTGATCATAAATAGCAAAAGAATTGACATGCCTATGAAAACACCATTTTGGT
AAATAGCATCACTTATAGGGGCATTTCTTATAAACTATTTTTCATCAATTATTGATTTTG
GTGAAATAAACCAGTTACAGAATGTCTATATATACTTGGAAATATGAAATTATTTTAGCA
CCCAAATTTTTGACATTGACATTATTGGCAATCAACTGGCTTTTAAAAAAAAGTATTTTT
GCTGAATATTATTTTATAAATATAAGTAAATAAGGGCTTGAAGGGAATATATTTTAGGAG
GCGTTTTGTCCTAATTTTTAAATTCTACACCTAAACCAAAGACTTGACATGACTTCTAAC
AGCAGTAGTTTCAAGTGATGAACTGCACTTAGTGTTACTCTACATTTTAAAATGGTACTT
TGATGCCAACAAGTGCCCAGGAAGCTGACTTTGAAGAGTCACCACCAGCCTAATCTACTA
TATAAATGGCAGTCCACTTTTGGTAAAAGAAGAAAGAATAAAAAGCTATGTGTTTTAAGA
AGAAACAGTCTTAGACATTCTGTCACCCTTTGGCAATTTAAAGAAAATATTTAGGAGCTG
TTTTGCTGAAGATTTCTCCATTCCCAGTGCTGAGAATAAAGGCAACTAGTAGCGATTCCT
TTAGATTGTCTGATTTCTCTTTGTTATGGAGTATACCTGTTAATTGCAGCCTCGAATGAT
GTAACTATGAAATCAGAGCTCTTTGTTCACCAAAGAACAGACCAATTAAAATACTTATTT
ACAGAAGTATTGTAGTTCTATTAAAAGGCAAATGAAGTTCAACTTAATGTTCTCTATAAT
GTACTATTTTATTATGTTTTTTCTTCACAATTAGCCTTTGTTTTTTAGATTTAAATTAAT
TTTTGTTGAATGAAATGACTTCAGGCAAGTCTCCTTTATAATGGTTTTTCAAATGCCATT
CATCCTGGTTTGTCATGTTGTGTGTGTTTGTAAGTATGAATGTACTTTTTCCAGAAGCTT
GGCAAATGAATAGAAGTGAAAAGTAATGATGTTATTTACCAATACAAGTGAAATGATTAA
GTTAAAAGTGTCTACAAAGTCTTTGTTAGGCCTGACTGGGTACAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGACAGAATCTACTACATGGTGGCCCCATCGCCAGAAGCCATGCGGATCTGGATGGATG
TTATAGTTACTGGGGCAGAAGGTTACACTCACTTCTTGTTGTAGTGAACTGACACAACAG
TGCGCTTCAGGGCCAACTGCAATAATCTCTTCCAAGAATGAAGCCATATTCAATCCCAGG
TGGAAAGACCCAACAGACCCATTGCTTTAACTGTGTACTCAGAACTGCTTTTGTGTGAAC
AAAAGTCACTTGTAAAAGAGAAAGAAGGGGTTTTTCAGTTCAAAGCTTGACCATGAATAA
TTCAAAGCTTGATCATAAATAGCAAAAGAATTGACATGCCTATGAAAACACCATTTTGGT
AAATAGCATCACTTATAGGGGCATTTCTTATAAACTATTTTTCATCAATTATTGATTTTG
GTGAAATAAACCAGTTACAGAATGTCTATATATACTTGGAAATATGAAATTATTTTAGCA
CCCAAATTTTTGACATTGACATTATTGGCAATCAACTGGCTTTTAAAAAAAAGTATTTTT
GCTGAATATTATTTTATAAATATAAGTAAATAAGGGCTTGAAGGGAATATATTTTAGGAG
GCGTTTTGTCCTAATTTTTAAATTCTACACCTAAACCAAAGACTTGACATGACTTCTAAC
AGCAGTAGTTTCAAGTGATGAACTGCACTTAGTGTTACTCTACATTTTAAAATGGTACTT
TGATGCCAACAAGTGCCCAGGAAGCTGACTTTGAAGAGTCACCACCAGCCTAATCTACTA
TATAAATGGCAGTCCACTTTTGGTAAAAGAAGAAAGAATAAAAAGCTATGTGTTTTAAGA
AGAAACAGTCTTAGACATTCTGTCACCCTTTGGCAATTTAAAGAAAATATTTAGGAGCTG
TTTTGCTGAAGATTTCTCCATTCCCAGTGCTGAGAATAAAGGCAACTAGTAGCGATTCCT
TTAGATTGTCTGATTTCTCTTTGTTATGGAGTATACCTGTTAATTGCAGCCTCGAATGAT
GTAACTATGAAATCAGAGCTCTTTGTTCACCAAAGAACAGACCAATTAAAATACTTATTT
ACAGAAGTATTGTAGTTCTATTAAAAGGCAAATGAAGTTCAACTTAATGTTCTCTATAAT
GTACTATTTTATTATGTTTTTTCTTCACAATTAGCCTTTGTTTTTTAGATTTAAATTAAT
TTTTGTTGAATGAAATGACTTCAGGCAAGTCTCCTTTATAATGGTTTTTCAAATGCCATT
CATCCTGGTTTGTCATGTTGTGTGTGTTTGTAAGTATGAATGTACTTTTTCCAGAAGCTT
GGCAAATGAATAGAAGTGAAAAGTAATGATGTTATTTACCAATACAAGTGAAATGATTAA
GTTAAAAGTGTCTACAAAGTCTTTGTTAGGCCTGACTGGGTACAATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1428, gnl|bosTau2|chr1 (32425914-32427345)
               

               
               1-1428, gnl|Hg17|chr3 (113175997-113177438)
               

               
               1-1428, gnl|Mm7|chr16 (45525420-45524121)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1428, gnl|bosTau2|chr1 (32425914-32427345)
               

               
               1-1428, gnl|Hg17|chr3 (113175997-113177438)
               

               
               1-1428, gnl|Mm7|chr16 (45525420-45524121)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               kid (0.648677)
               

               
               fat (0.294855)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.648677)
               

               
               fat (0.294855)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-1428, gnl\|bosTau2\|chr1 (32425914-32427345)
	1-1428, gnl\|Hg17\|chr3 (113175997-113177438)
	1-1428, gnl\|Mm7\|chr16 (45525420-45524121)

	kid (0.648677)
	fat (0.294855)
	sug (0.254582)
	hea (0.204499)
	aor (0.195274)
	gul (0.177588)
	ton (0.1755)
	mga (0.160205)
	ski (0.146735)
	spl (0.143184)
	lyg (0.133103)
	clu (0.119646)
	med (0.116252)
	jca (0.11396)