Ss1.1-MPL-MPL384_8_E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTGGTACCTGTGCTGCGAGACGCAGATGGAGCTCCGGGAGTGGTTCGCCACCTTCCTC TTCATGCAGCACGACGGCCTGGTGTGGCCCTCGGAGCCCTCTCGCGTGTCCCGGGCGGTG CCCGAGGTCCGGCTGGGCAGCGTATCACTGATCCCGCTGCGCGGCAGTGAGAACGAGATG CGCCGGAGTGTGGCCGCCTTTGCCGCCGACCCCCTTTCCCTCCTCCGAAACGTCTGAGCA CAGGTGGGACTCTGTCGCCGCTGCCACCACCACCACCGCCGCCGCCGCCACCACCACCAC GAAGCCTTCCGGGCAGACACCCTCATGCCCTGCATGCCTGGTGTGAGCCAGCAGGGGGCG CATGAGGAAGCCACACCCCTGCACCCCACATCCTGACTGCGCATGGGATTCCCTGGCCGG GATGTGGGGGGCAGGCAGCAGGGTCTGCCTGCCGAGGAATCCCTTACCTCTTCCCAGCAG GTGGGAGCTCAGCCCTGCTGGCCTGACCTACACCCCTACCCCCCGCCGCCCGCCAGGGTC ACCTACCCTGAGGTCAGGGGGTCGGAGAGAACTCTGGACAAATGCCATCCTTTCAGAGCT TGAGGCCCCGGGGCCCCCGCTGGAAGGGAGCCCACCCCTTTGCTACAAACTCCAGAACAG CCAAGCGCGGGTGCTCTGAAGGATTGCTCAGCTGGGGTGGGACGGGAGCTCTTGGCCGAG AACTGGACTGGGGGGCCTTCAGGCCCCTTTCTGGTCTGGGCTTTACCGGGAGGGCCCAGG CTGCCCGGTGCCCCTTCCCCACTTTGGGGACCTTTTGATAATATAAATATACCTGTATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTGGTACCTGTGCTGCGAGACGCAGATGGAGCTCCGGGAGTGGTTCGCCACCTTCCTC TTCATGCAGCACGACGGCCTGGTGTGGCCCTCGGAGCCCTCTCGCGTGTCCCGGGCGGTG CCCGAGGTCCGGCTGGGCAGCGTATCACTGATCCCGCTGCGCGGCAGTGAGAACGAGATG CGCCGGAGTGTGGCCGCCTTTGCCGCCGACCCCCTTTCCCTCCTCCGAAACGTCTGAGCA CAGGTGGGACTCTGTCGCCGCTGCCACCACCACCACCGCCGCCGCCGCCACCACCACCAC GAAGCCTTCCGGGCAGACACCCTCATGCCCTGCATGCCTGGTGTGAGCCAGCAGGGGGCG CATGAGGAAGCCACACCCCTGCACCCCACATCCTGACTGCGCATGGGATTCCCTGGCCGG GATGTGGGGGGCAGGCAGCAGGGTCTGCCTGCCGAGGAATCCCTTACCTCTTCCCAGCAG GTGGGAGCTCAGCCCTGCTGGCCTGACCTACACCCCTACCCCCCGCCGCCCGCCAGGGTC ACCTACCCTGAGGTCAGGGGGTCGGAGAGAACTCTGGACAAATGCCATCCTTTCAGAGCT TGAGGCCCCGGGGCCCCCGCTGGAAGGGAGCCCACCCCTTTGCTACAAACTCCAGAACAG CCAAGCGCGGGTGCTCTGAAGGATTGCTCAGCTGGGGTGGGACGGGAGCTCTTGGCCGAG AACTGGACTGGGGGGCCTTCAGGCCCCTTTCTGGTCTGGGCTTTACCGGGAGGGCCCAGG CTGCCCGGTGCCCCTTCCCCACTTTGGGGACCTTTTGATAATATAAATATACCTGTATAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 322-471, + strand, RNAz p=0.690477 | |
| 714-840, + strand, RNAz p=0.985484 | |
| 714-840, + strand, RNAz p=0.996786 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 322-471, + strand, RNAz p=0.690477 | |
| 714-840, + strand, RNAz p=0.985484 | |
| 714-840, + strand, RNAz p=0.996786 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AB209473, + | |
| 5' of AB209473, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 67-218, gnl|bosTau2|chr15 (29391881-29392032) | |
| 67-218, gnl|canFam2|chr21 (28535642-28535477) | |
| 67-218, gnl|dasNov1|scaffold_35786 (13973-13807) | |
| 67-218, gnl|fr1|chrUn (258335057-258335235) | |
| 67-218, gnl|hg17|chr11 (72074730-72074895) | |
| 67-218, gnl|Hg17|chr11 (72074887-72074736) | |
| 67-218, gnl|loxAfr1|scaffold_57497 (2133-2298) | |
| 67-218, gnl|mm7|chr7 (97457322-97457157) | |
| 67-218, gnl|Mm7|chr7 (97457163-97457314) | |
| 67-218, gnl|oryCun1|scaffold_205931 (1105-940) | |
| 67-218, gnl|rheMac2|chr14 (70773177-70773342) | |
| 67-218, gnl|rn3|chr1 (158990365-158990200) | |
| 67-218, gnl|xenTro1|scaffold_964 (111330-111162) | |
| 287-505, gnl|bosTau2|chr15 (29392315-29392532) | |
| 287-505, gnl|canFam2|chr21 (28536198-28536051) | |
| 287-505, gnl|echTel1|scaffold_301026 (4529-4392) | |
| 287-505, gnl|hg17|chr11 (72074079-72074244) | |
| 287-505, gnl|Hg17|chr11 (72074327-72074112) | |
| 287-505, gnl|loxAfr1|scaffold_57497 (1473-1632) | |
| 287-505, gnl|mm7|chr7 (97457847-97457683) | |
| 287-505, gnl|Mm7|chr7 (97457595-97457805) | |
| 287-505, gnl|oryCun1|scaffold_205931 (1509-1346) | |
| 287-505, gnl|rheMac2|chr14 (70772369-70772534) | |
| 287-505, gnl|rn3|chr1 (158990881-158990724) | |
| 714-840, gnl|bosTau2|chr15 (29392663-29392788) | |
| 714-840, gnl|canFam2|chr21 (28536573-28536373) | |
| 714-840, gnl|echTel1|scaffold_301026 (4821-4626) | |
| 714-840, gnl|hg17|chr11 (72073712-72073909) | |
| 714-840, gnl|Hg17|chr11 (72073895-72073771) | |
| 714-840, gnl|loxAfr1|scaffold_57497 (1108-1305) | |
| 714-840, gnl|mm7|chr7 (97458190-97457992) | |
| 714-840, gnl|Mm7|chr7 (97458004-97458131) | |
| 714-840, gnl|oryCun1|scaffold_184056 (7117-6971) | |
| 714-840, gnl|rheMac2|chr14 (70772002-70772198) | |
| 714-840, gnl|rn3|chr1 (158991232-158991034) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-218, gnl|bosTau2|chr15 (29391881-29392032) | |
| 67-218, gnl|canFam2|chr21 (28535642-28535477) | |
| 67-218, gnl|dasNov1|scaffold_35786 (13973-13807) | |
| 67-218, gnl|fr1|chrUn (258335057-258335235) | |
| 67-218, gnl|hg17|chr11 (72074730-72074895) | |
| 67-218, gnl|Hg17|chr11 (72074887-72074736) | |
| 67-218, gnl|loxAfr1|scaffold_57497 (2133-2298) | |
| 67-218, gnl|mm7|chr7 (97457322-97457157) | |
| 67-218, gnl|Mm7|chr7 (97457163-97457314) | |
| 67-218, gnl|oryCun1|scaffold_205931 (1105-940) | |
| 67-218, gnl|rheMac2|chr14 (70773177-70773342) | |
| 67-218, gnl|rn3|chr1 (158990365-158990200) | |
| 67-218, gnl|xenTro1|scaffold_964 (111330-111162) | |
| 287-505, gnl|bosTau2|chr15 (29392315-29392532) | |
| 287-505, gnl|canFam2|chr21 (28536198-28536051) | |
| 287-505, gnl|echTel1|scaffold_301026 (4529-4392) | |
| 287-505, gnl|hg17|chr11 (72074079-72074244) | |
| 287-505, gnl|Hg17|chr11 (72074327-72074112) | |
| 287-505, gnl|loxAfr1|scaffold_57497 (1473-1632) | |
| 287-505, gnl|mm7|chr7 (97457847-97457683) | |
| 287-505, gnl|Mm7|chr7 (97457595-97457805) | |
| 287-505, gnl|oryCun1|scaffold_205931 (1509-1346) | |
| 287-505, gnl|rheMac2|chr14 (70772369-70772534) | |
| 287-505, gnl|rn3|chr1 (158990881-158990724) | |
| 714-840, gnl|bosTau2|chr15 (29392663-29392788) | |
| 714-840, gnl|canFam2|chr21 (28536573-28536373) | |
| 714-840, gnl|echTel1|scaffold_301026 (4821-4626) | |
| 714-840, gnl|hg17|chr11 (72073712-72073909) | |
| 714-840, gnl|Hg17|chr11 (72073895-72073771) | |
| 714-840, gnl|loxAfr1|scaffold_57497 (1108-1305) | |
| 714-840, gnl|mm7|chr7 (97458190-97457992) | |
| 714-840, gnl|Mm7|chr7 (97458004-97458131) | |
| 714-840, gnl|oryCun1|scaffold_184056 (7117-6971) | |
| 714-840, gnl|rheMac2|chr14 (70772002-70772198) | |
| 714-840, gnl|rn3|chr1 (158991232-158991034) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nep (0.183925) | |
| csp (0.161186) | |
| cag (0.151194) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| csp (0.161186) | |
| cag (0.151194) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| eje (0.0988338) |