Ss1.1-MPL-MPL384_8_E10.5
|
GAAGAGACTGAGGAAGATGGGCTCTGCAGAGATGGTTTGCTTGGGCTGCCCACCAGGGTG
AGCGACTGTCGCTTTACTCTCAGATACAAGTCTGGGTGCTGGGCACCCAGATTCCCCGCT
GGCCAGGATGGAAGGGTGGTCCTGAACCAGGATGGTATTATCGTTGTATGGACTGAAGCC
ACCTGGAGTGAAACATGGCATCTTCCGTGCATAGGTGAGGAGAGCCTGCTCCCCTGAAGT
GGGCCATTCACGAGGCCCACTGTTGGGAAATGAAGAATTTCCCAATTAGGAAGTGTGACA
GAACTGAGGTCTCTTGAGAGAGCTTGGCCAATGCAGGAACAGTGGTTTGGGGAGTAGAAA
CACTAATGATTTGAGGGAAGGGCTCTGACATTCCATGAATGTATCAGGAAATGTTATATG
CGTGTGTGTGTTTGCACACTTGTTCACAGGCTGTGTCAGTGTAAGAGCCGGTGTTCTGTG
CCTGACAGCAAGTCTAGATATTTCCCCAAATTGTGTAGACTGTGATGTCACATAGAATGG
TCGGTTTCAAGACGTCGTGGGTCACTCCTAGGGCCTCTTGGGTCTCCTATGTGATACATC
TAAATGTATCATCCTGGGGCACTGACTGTGACCAGCACTCAATTTCCAGTATCACTTTCA
CGTAGATGTATGTTTCTTGGCCAGTTACCCTTTCTGACCTTCCAGCCAAGTTCATCCAAT
CCTCACTGAGTGAGGTGAGGACCACTCCTGTACACTGAGTATTTAATAATTATGTTCTAC
TATTTTTATTTATATCTATTTTTATAATTTTGAATAAAGATGATCAATAAAACGTGATTT
TTCTGAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAGAGACTGAGGAAGATGGGCTCTGCAGAGATGGTTTGCTTGGGCTGCCCACCAGGGTG
AGCGACTGTCGCTTTACTCTCAGATACAAGTCTGGGTGCTGGGCACCCAGATTCCCCGCT
GGCCAGGATGGAAGGGTGGTCCTGAACCAGGATGGTATTATCGTTGTATGGACTGAAGCC
ACCTGGAGTGAAACATGGCATCTTCCGTGCATAGGTGAGGAGAGCCTGCTCCCCTGAAGT
GGGCCATTCACGAGGCCCACTGTTGGGAAATGAAGAATTTCCCAATTAGGAAGTGTGACA
GAACTGAGGTCTCTTGAGAGAGCTTGGCCAATGCAGGAACAGTGGTTTGGGGAGTAGAAA
CACTAATGATTTGAGGGAAGGGCTCTGACATTCCATGAATGTATCAGGAAATGTTATATG
CGTGTGTGTGTTTGCACACTTGTTCACAGGCTGTGTCAGTGTAAGAGCCGGTGTTCTGTG
CCTGACAGCAAGTCTAGATATTTCCCCAAATTGTGTAGACTGTGATGTCACATAGAATGG
TCGGTTTCAAGACGTCGTGGGTCACTCCTAGGGCCTCTTGGGTCTCCTATGTGATACATC
TAAATGTATCATCCTGGGGCACTGACTGTGACCAGCACTCAATTTCCAGTATCACTTTCA
CGTAGATGTATGTTTCTTGGCCAGTTACCCTTTCTGACCTTCCAGCCAAGTTCATCCAAT
CCTCACTGAGTGAGGTGAGGACCACTCCTGTACACTGAGTATTTAATAATTATGTTCTAC
TATTTTTATTTATATCTATTTTTATAATTTTGAATAAAGATGATCAATAAAACGTGATTT
TTCTGAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
169-358, AJ692323 KN261 Bos taurus cDNA clone KN261-026_O03, mRNA sequence
(emb|AJ692323.1|), blast E-value=5e-39, identity=86.46% |
|
169-358, AM022349 KN-252-lymph, Bos sp. Bos sp. cDNA clone C0005916l08 3',
(emb|AM022349.1|), blast E-value=5e-39, identity=86.46% |
|
169-358, 59148 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW484086.1|),
blast E-value=5e-39, identity=86.46% |
|
169-358, BP250026A10C9 Soares normalized bovine placenta Bos taurus cDNA
(gb|BF041513.1|), blast E-value=5e-39, identity=86.46% |
|
169-358, 970866 BARC 5BOV Bos taurus cDNA 3', mRNA sequence (gb|CK848148.1|),
blast E-value=5e-39, identity=86.46% |
|
169-358, UMC-bcl_0A01-030-e09 Day 14 CL from a pregnant animal bcl Bos
(gb|CX948720.1|), blast E-value=5e-39, identity=86.46% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
169-358, AJ692323 KN261 Bos taurus cDNA clone KN261-026_O03, mRNA sequence
(emb|AJ692323.1|), blast E-value=5e-39, identity=86.46% |
|
169-358, AM022349 KN-252-lymph, Bos sp. Bos sp. cDNA clone C0005916l08 3',
(emb|AM022349.1|), blast E-value=5e-39, identity=86.46% |
|
169-358, 59148 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|AW484086.1|),
blast E-value=5e-39, identity=86.46% |
|
169-358, BP250026A10C9 Soares normalized bovine placenta Bos taurus cDNA
(gb|BF041513.1|), blast E-value=5e-39, identity=86.46% |
|
169-358, 970866 BARC 5BOV Bos taurus cDNA 3', mRNA sequence (gb|CK848148.1|),
blast E-value=5e-39, identity=86.46% |
|
169-358, UMC-bcl_0A01-030-e09 Day 14 CL from a pregnant animal bcl Bos
(gb|CX948720.1|), blast E-value=5e-39, identity=86.46% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
sme (0.305437) |
|
lin (0.291206) |
|
mgp (0.230681) |
|
ton (0.1755) |
|
duo (0.172801) |
|
csp (0.161186) |
|
csk (0.140746) |
|
ste (0.135208) |
|
sme (0.305437) |
|
lin (0.291206) |
|
mgp (0.230681) |
|
ton (0.1755) |
|
duo (0.172801) |
|
csp (0.161186) |
|
csk (0.140746) |
|
ste (0.135208) |