Non-Coding RNA Search

Ss1.1-MPL-MPL384_8_I21.5

Sequence:


               
               AGTACACTGTTGGTGGGATTGTAAATTGGTGCAACCACTGCGGAAAGCAGGATGGAGATT
CCTCAGAAAACTAAACATAGAACTACCATTGGATCCAGCAATCCCACTCCTGGGCATCTA
TCCAGAGAAAACCACGACTCGCAAAGACACATGTACTCCAATGTTCATTGCAGCACTATT
TACAATAGCCAAAACGTGGAAACAACCTAAATGTCCATCGACAGAGGAGTGGACCCAGAA
GATGTGGTACATATACTCAATGGAATATTACTCAGCCATTAAAAGGAAGACTCTCATATC
TACTTTGACCACATGGATGGACCTTCAGTCCACTAGGCTAAGTGAAGTCCTGCAGATTGT
GAGACACCAACATCCAATGCTTTCGCTTCCAGGCTTCCCATGATTTTTGGACGACTGAAC
TTGTTTGCAGAGCAGATGCTGACTCACAGACATTGAAAAACTTATGGTCTCCAGAGGAGA
CAGTTTGGGGGGTGGGGGGATGTGCCTGGGCTGTGGGATGGAAATCCTGTGAAATCAGAT
TGTTATGATCATTATACAACTACAGATGTGATAAATTCATTTGAGTAATAAAAAAACATA
TATATACCTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACACTGTTGGTGGGATTGTAAATTGGTGCAACCACTGCGGAAAGCAGGATGGAGATT
CCTCAGAAAACTAAACATAGAACTACCATTGGATCCAGCAATCCCACTCCTGGGCATCTA
TCCAGAGAAAACCACGACTCGCAAAGACACATGTACTCCAATGTTCATTGCAGCACTATT
TACAATAGCCAAAACGTGGAAACAACCTAAATGTCCATCGACAGAGGAGTGGACCCAGAA
GATGTGGTACATATACTCAATGGAATATTACTCAGCCATTAAAAGGAAGACTCTCATATC
TACTTTGACCACATGGATGGACCTTCAGTCCACTAGGCTAAGTGAAGTCCTGCAGATTGT
GAGACACCAACATCCAATGCTTTCGCTTCCAGGCTTCCCATGATTTTTGGACGACTGAAC
TTGTTTGCAGAGCAGATGCTGACTCACAGACATTGAAAAACTTATGGTCTCCAGAGGAGA
CAGTTTGGGGGGTGGGGGGATGTGCCTGGGCTGTGGGATGGAAATCCTGTGAAATCAGAT
TGTTATGATCATTATACAACTACAGATGTGATAAATTCATTTGAGTAATAAAAAAACATA
TATATACCTAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34865460|ref|XP_343448.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34865460|ref|XP_343448.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-279, + strand, RNAz p=0.706402

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-279, + strand, RNAz p=0.706402

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-467, gnl|bosTau2|chr12 (20218465-20218925)
               


               
               2-383, gnl|bosTau2|chr10 (2408427-2408041)
               


               
               3-381, gnl|bosTau2|chr10 (6586296-6586674)
               


               
               5-373, gnl|bosTau2|chr10 (51559182-51559550)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-467, gnl|bosTau2|chr12 (20218465-20218925)
               


               
               2-383, gnl|bosTau2|chr10 (2408427-2408041)
               


               
               3-381, gnl|bosTau2|chr10 (6586296-6586674)
               


               
               5-373, gnl|bosTau2|chr10 (51559182-51559550)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               sag (0.182715)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               sag (0.182715)
               

               
               pgl (0.118483)

	1-467, gnl\|bosTau2\|chr12 (20218465-20218925)

	2-383, gnl\|bosTau2\|chr10 (2408427-2408041)

	3-381, gnl\|bosTau2\|chr10 (6586296-6586674)

	5-373, gnl\|bosTau2\|chr10 (51559182-51559550)