Non-Coding RNA Search

Ss1.1-Mixc-0025a08.5

Sequence:


               
               GGAAGGAAAGTAAGACTGAAGAGAGAAAAAGGGGGAAGAAAGAAAAAGAGGATGACCGGA
AGGAGAAGAGAATTACGGATTCAGGTGTTTCCAGGAAAGCGTCTCCTAGGGATAAAAAGG
ACAGAGAAAAGGAGAAAGTGGGGCCGGATAAAGGTGCGAAAGCCAAGGAAAATAGGAGGA
AATCAACCACCATAAAGGAAGTTTCTGGTAAAATGGCACCTGGAGGCAAAGATGATAGAA
AGGAAGGGAGAAGTTCTGCCAAACACGCTCACCCAGCCAAAGGAGATAACCAGAAGAGAA
GGCACTGAAGTTCTAACAGCATCATCCCAGGAAATGGTCAGAGTTTTCATCCTGATTCTG
CTGCAGGGCATGGAAAACTCACTGTTGCTCTGGTTGGGGAAGAAGTGCCATTTAGCCACT
GAATGTCTTTATTGGTGCTCAGCAAGAAAAGTCTTTGAAATTTAAGTACCTTTCTCATGC
TTCTAAATGTAAAAGATGAAGCTTTGTGAAAATATGTCCTTAAAACTGTGATGTAATTAC
AACTGTTTCTATTAACATATTGATCCTGTATGCAGGTAAACTGTATACGTATAAACACGC
ATTGTAATGACTTATTAATACAGAATATTTTCCTTGGAGTTACATAAGAATATTAACATT
TTAAATAGTATTTACTTGCAGAGTGATTTATAAGTTTTCGGTAAGACACATACTCAGGTA
GGTAGGAAGTTCTCTTCTTTCTCAGTCAGCTGTTGTTCTGCTTCCCTCCTTCCCCTTCCT
GCTTCCCTGCTTCCCTCTCTTGCTCACCTCCCCTTCCTTTCTCCACCCCCTTTTGTGTCT
CTGTCTTCTGCTCCCCTCCCCCCAGCCTTTGCCGGGCCCCTCCCCAGGCTCTTTTGAGAT
CACCTGCCTCATCCCCTCTTCCTCAGGCTCTTCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGAAAGTAAGACTGAAGAGAGAAAAAGGGGGAAGAAAGAAAAAGAGGATGACCGGA
AGGAGAAGAGAATTACGGATTCAGGTGTTTCCAGGAAAGCGTCTCCTAGGGATAAAAAGG
ACAGAGAAAAGGAGAAAGTGGGGCCGGATAAAGGTGCGAAAGCCAAGGAAAATAGGAGGA
AATCAACCACCATAAAGGAAGTTTCTGGTAAAATGGCACCTGGAGGCAAAGATGATAGAA
AGGAAGGGAGAAGTTCTGCCAAACACGCTCACCCAGCCAAAGGAGATAACCAGAAGAGAA
GGCACTGAAGTTCTAACAGCATCATCCCAGGAAATGGTCAGAGTTTTCATCCTGATTCTG
CTGCAGGGCATGGAAAACTCACTGTTGCTCTGGTTGGGGAAGAAGTGCCATTTAGCCACT
GAATGTCTTTATTGGTGCTCAGCAAGAAAAGTCTTTGAAATTTAAGTACCTTTCTCATGC
TTCTAAATGTAAAAGATGAAGCTTTGTGAAAATATGTCCTTAAAACTGTGATGTAATTAC
AACTGTTTCTATTAACATATTGATCCTGTATGCAGGTAAACTGTATACGTATAAACACGC
ATTGTAATGACTTATTAATACAGAATATTTTCCTTGGAGTTACATAAGAATATTAACATT
TTAAATAGTATTTACTTGCAGAGTGATTTATAAGTTTTCGGTAAGACACATACTCAGGTA
GGTAGGAAGTTCTCTTCTTTCTCAGTCAGCTGTTGTTCTGCTTCCCTCCTTCCCCTTCCT
GCTTCCCTGCTTCCCTCTCTTGCTCACCTCCCCTTCCTTTCTCCACCCCCTTTTGTGTCT
CTGTCTTCTGCTCCCCTCCCCCCAGCCTTTGCCGGGCCCCTCCCCAGGCTCTTTTGAGAT
CACCTGCCTCATCCCCTCTTCCTCAGGCTCTTCCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-160, - strand, RNAz p=0.993837

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.993837

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-911, gnl|bosTau2|chr14 (15447767-15448663)
               

               
               2-911, gnl|Hg17|chr8 (62740664-62739821)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-911, gnl|bosTau2|chr14 (15447767-15448663)
               

               
               2-911, gnl|Hg17|chr8 (62740664-62739821)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               che (0.136314)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

	2-911, gnl\|bosTau2\|chr14 (15447767-15448663)
	2-911, gnl\|Hg17\|chr8 (62740664-62739821)