Ss1.1-Mixc-0025b01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCAGCTCCTCGGGGAAGAAGGAGGCATCATCTACTAGCAAAGCTGTCCCGGACGGGAA GCTGGTGAAAGCCTCATTTGCTCCAATAAGCTTTGCAATCAAGGCCAAAGAAAATGATCT ACTTCCCCTGGAAAAAAATCGTGTTAAGCTAGATGATGACAGTGATGATGATGAAGAAAG CAAAGAAGGCCAAGAAAGTTCTAGTAGTGCTACAAACACTAACCCGGCAGTTGCCCCACC CTGTGTAGTTGTTGAGGAGAAGCGGCCTCAACTTACCCAGGAGGAGCTAGAAGCAAAGCA AGCAAAGCAAAAGCTGGAGGACCGACTGGCAGCTGCTGCCAGGGAAAAGCTGGCCCAAGC ATCTAAGGAATCAAAGGAGAAACAGCTTCAAGCAGAACGTAAAAGGAAAGCAGCTTTATT TTTACAAACCTTAAAAAATCCTCTGCCAGAAGCAGAAGTCGGGAAAGCTGAGGAGAGTAC TTTCAATGCAGAGGAAGCCAGTGCTGTGTCCTGTCCTCTACTGGCCGGAGGCAGACCTCT GCCCACGTTAGACATTAAGCCTCCAGAGGGGCCCTCCAGCAAAAGCAAAGACCTGTCAAG GGAAGAGGAGAGAGAGAAGAAAAAGAAAAAGCACAAAAAACGGTCTCGAACAAGATCACG GTCTCCCAAGTACCACTCGTCGTCGTCCAAGTCCAGGTCCAGATCCCACTCAAAAGCAAA GCATTGTCTTCCCAGTGCCTATCGAACAGCGCGGCGCTCCAGGTCCCGGTCCCGGTCCCC TCGGAGGCGAGCACACTCTCCCGAGCGACGGCGGGAGGACAGGAGTGTCCCCACTGCCTA CCGGATGAGCAACAGCCCTGGCGTCAGCAGGAAGCGGACCCGGTCCAGAAGCCCCCATGA GAAGAAGAAGAAGAGGCGCTCACGGTCGCGGACCAAGTCCAAGGCCGGTTCTCAGCCAGC CTCCCCGAGCAAGCAGGCCGCACGCCGGCACTCGGCCAGCATCTCTCCTGTGGAGAGTCG GGGCTCCAGCCAGGAGCGCTCCAGGGGAGTTTCTCAGGAAAAAGACGGTCAGATCTCCTC GGCAATTGTTTCTTCTGTGCAGAGCAAAATCACTCAGGACCTCATGGCCAAAGTAAGAGC GATGCTCGCAGCTTCCAAAAACATGCAGACTAGTGCCTCCTGAGCCCGGCCAGGGCCATG GGCGACTGGGCTGGGCCTGGGGCCCCAGCGTCGGAGGTTCCAGAAGCCGGCGGAGCAGAG GAGCACGCTTCTGCACAGACCACCGCAGAGCCCCGCCCACATCCTCCCCGGCTCCCTTGG ACAGTTGGCGGGTTTTGTAAATTAATTTTTGATGACATTTTCAGTTTAAAATTTTTGACC AGCAGTCTCCTACCTGTATATTTGTAAATAATATCATGTTTCTGTGAAAATGTATTATCA AATAAAATGGGAGGAAAACACCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCAGCTCCTCGGGGAAGAAGGAGGCATCATCTACTAGCAAAGCTGTCCCGGACGGGAA GCTGGTGAAAGCCTCATTTGCTCCAATAAGCTTTGCAATCAAGGCCAAAGAAAATGATCT ACTTCCCCTGGAAAAAAATCGTGTTAAGCTAGATGATGACAGTGATGATGATGAAGAAAG CAAAGAAGGCCAAGAAAGTTCTAGTAGTGCTACAAACACTAACCCGGCAGTTGCCCCACC CTGTGTAGTTGTTGAGGAGAAGCGGCCTCAACTTACCCAGGAGGAGCTAGAAGCAAAGCA AGCAAAGCAAAAGCTGGAGGACCGACTGGCAGCTGCTGCCAGGGAAAAGCTGGCCCAAGC ATCTAAGGAATCAAAGGAGAAACAGCTTCAAGCAGAACGTAAAAGGAAAGCAGCTTTATT TTTACAAACCTTAAAAAATCCTCTGCCAGAAGCAGAAGTCGGGAAAGCTGAGGAGAGTAC TTTCAATGCAGAGGAAGCCAGTGCTGTGTCCTGTCCTCTACTGGCCGGAGGCAGACCTCT GCCCACGTTAGACATTAAGCCTCCAGAGGGGCCCTCCAGCAAAAGCAAAGACCTGTCAAG GGAAGAGGAGAGAGAGAAGAAAAAGAAAAAGCACAAAAAACGGTCTCGAACAAGATCACG GTCTCCCAAGTACCACTCGTCGTCGTCCAAGTCCAGGTCCAGATCCCACTCAAAAGCAAA GCATTGTCTTCCCAGTGCCTATCGAACAGCGCGGCGCTCCAGGTCCCGGTCCCGGTCCCC TCGGAGGCGAGCACACTCTCCCGAGCGACGGCGGGAGGACAGGAGTGTCCCCACTGCCTA CCGGATGAGCAACAGCCCTGGCGTCAGCAGGAAGCGGACCCGGTCCAGAAGCCCCCATGA GAAGAAGAAGAAGAGGCGCTCACGGTCGCGGACCAAGTCCAAGGCCGGTTCTCAGCCAGC CTCCCCGAGCAAGCAGGCCGCACGCCGGCACTCGGCCAGCATCTCTCCTGTGGAGAGTCG GGGCTCCAGCCAGGAGCGCTCCAGGGGAGTTTCTCAGGAAAAAGACGGTCAGATCTCCTC GGCAATTGTTTCTTCTGTGCAGAGCAAAATCACTCAGGACCTCATGGCCAAAGTAAGAGC GATGCTCGCAGCTTCCAAAAACATGCAGACTAGTGCCTCCTGAGCCCGGCCAGGGCCATG GGCGACTGGGCTGGGCCTGGGGCCCCAGCGTCGGAGGTTCCAGAAGCCGGCGGAGCAGAG GAGCACGCTTCTGCACAGACCACCGCAGAGCCCCGCCCACATCCTCCCCGGCTCCCTTGG ACAGTTGGCGGGTTTTGTAAATTAATTTTTGATGACATTTTCAGTTTAAAATTTTTGACC AGCAGTCTCCTACCTGTATATTTGTAAATAATATCATGTTTCTGTGAAAATGTATTATCA AATAAAATGGGAGGAAAACACCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 183-610, - strand, RNAz p=0.841973 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 183-610, - strand, RNAz p=0.841973 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 70-302, gnl|bosTau2|chr17 (23894816-23895048) | |
| 70-302, gnl|Hg17|chr12 (130915229-130915461) | |
| 70-302, gnl|Mm7|chr5 (128787283-128787515) | |
| 492-764, gnl|bosTau2|chr17 (23907912-23908181) | |
| 492-764, gnl|Hg17|chr12 (130928838-130929107) | |
| 492-764, gnl|Mm7|chr5 (128792272-128792541) | |
| 884-1045, gnl|bosTau2|chr17 (23925875-23926036) | |
| 884-1045, gnl|Hg17|chr12 (130947948-130948136) | |
| 884-1045, gnl|Mm7|chr5 (128807467-128807646) | |
| 1110-1212, gnl|bosTau2|chr17 (23927714-23927820) | |
| 1110-1212, gnl|canFam2|chr26 (4042319-4042226) | |
| 1110-1212, gnl|dasNov1|scaffold_182185 (3696-3588) | |
| 1110-1212, gnl|echTel1|scaffold_224971 (1092-1191) | |
| 1110-1212, gnl|galGal2|chr15 (2756977-2756884) | |
| 1110-1212, gnl|hg17|chr12 (130950173-130950273) | |
| 1110-1212, gnl|Hg17|chr12 (130950190-130950304) | |
| 1110-1212, gnl|mm7|chr5 (128808810-128808908) | |
| 1110-1212, gnl|Mm7|chr5 (128808825-128808950) | |
| 1110-1212, gnl|monDom2|scaffold_54 (4352507-4352406) | |
| 1110-1212, gnl|oryCun1|scaffold_214742 (9517-9415) | |
| 1110-1212, gnl|panTro1|chr10 (133987777-133987877) | |
| 1110-1212, gnl|rheMac2|chr11 (133095997-133096097) | |
| 1110-1212, gnl|rn3|chr12 (28042884-28042788) | |
| 1110-1212, gnl|tetNig1|chrUn_random (126737162-126737084) | |
| 1300-1464, gnl|bosTau2|chr17 (23927861-23928025) | |
| 1300-1464, gnl|canFam2|chr26 (4042225-4041935) | |
| 1300-1464, gnl|dasNov1|scaffold_182185 (3587-3261) | |
| 1300-1464, gnl|echTel1|scaffold_224971 (1192-1529) | |
| 1300-1464, gnl|galGal2|chr15 (2756883-2756492) | |
| 1300-1464, gnl|hg17|chr12 (130950274-130950555) | |
| 1300-1464, gnl|Hg17|chr12 (130950337-130950502) | |
| 1300-1464, gnl|mm7|chr5 (128808909-128809236) | |
| 1300-1464, gnl|Mm7|chr5 (128809048-128809203) | |
| 1300-1464, gnl|monDom2|scaffold_54 (4352405-4352003) | |
| 1300-1464, gnl|oryCun1|scaffold_214742 (9414-9087) | |
| 1300-1464, gnl|panTro1|chr10 (133987878-133988143) | |
| 1300-1464, gnl|rheMac2|chr11 (133096098-133096379) | |
| 1300-1464, gnl|rn3|chr12 (28042787-28042456) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 70-302, gnl|bosTau2|chr17 (23894816-23895048) | |
| 70-302, gnl|Hg17|chr12 (130915229-130915461) | |
| 70-302, gnl|Mm7|chr5 (128787283-128787515) | |
| 492-764, gnl|bosTau2|chr17 (23907912-23908181) | |
| 492-764, gnl|Hg17|chr12 (130928838-130929107) | |
| 492-764, gnl|Mm7|chr5 (128792272-128792541) | |
| 884-1045, gnl|bosTau2|chr17 (23925875-23926036) | |
| 884-1045, gnl|Hg17|chr12 (130947948-130948136) | |
| 884-1045, gnl|Mm7|chr5 (128807467-128807646) | |
| 1110-1212, gnl|bosTau2|chr17 (23927714-23927820) | |
| 1110-1212, gnl|canFam2|chr26 (4042319-4042226) | |
| 1110-1212, gnl|dasNov1|scaffold_182185 (3696-3588) | |
| 1110-1212, gnl|echTel1|scaffold_224971 (1092-1191) | |
| 1110-1212, gnl|galGal2|chr15 (2756977-2756884) | |
| 1110-1212, gnl|hg17|chr12 (130950173-130950273) | |
| 1110-1212, gnl|Hg17|chr12 (130950190-130950304) | |
| 1110-1212, gnl|mm7|chr5 (128808810-128808908) | |
| 1110-1212, gnl|Mm7|chr5 (128808825-128808950) | |
| 1110-1212, gnl|monDom2|scaffold_54 (4352507-4352406) | |
| 1110-1212, gnl|oryCun1|scaffold_214742 (9517-9415) | |
| 1110-1212, gnl|panTro1|chr10 (133987777-133987877) | |
| 1110-1212, gnl|rheMac2|chr11 (133095997-133096097) | |
| 1110-1212, gnl|rn3|chr12 (28042884-28042788) | |
| 1110-1212, gnl|tetNig1|chrUn_random (126737162-126737084) | |
| 1300-1464, gnl|bosTau2|chr17 (23927861-23928025) | |
| 1300-1464, gnl|canFam2|chr26 (4042225-4041935) | |
| 1300-1464, gnl|dasNov1|scaffold_182185 (3587-3261) | |
| 1300-1464, gnl|echTel1|scaffold_224971 (1192-1529) | |
| 1300-1464, gnl|galGal2|chr15 (2756883-2756492) | |
| 1300-1464, gnl|hg17|chr12 (130950274-130950555) | |
| 1300-1464, gnl|Hg17|chr12 (130950337-130950502) | |
| 1300-1464, gnl|mm7|chr5 (128808909-128809236) | |
| 1300-1464, gnl|Mm7|chr5 (128809048-128809203) | |
| 1300-1464, gnl|monDom2|scaffold_54 (4352405-4352003) | |
| 1300-1464, gnl|oryCun1|scaffold_214742 (9414-9087) | |
| 1300-1464, gnl|panTro1|chr10 (133987878-133988143) | |
| 1300-1464, gnl|rheMac2|chr11 (133096098-133096379) | |
| 1300-1464, gnl|rn3|chr12 (28042787-28042456) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| eep (0.245128) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nco (0.161734) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nco (0.161734) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) |