Ss1.1-Mixc-0025b13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTCTGCTCCGCTGTCACTCCAGGTGCTTGTACTTGGTGAACAGGTTGTAAAGAACCCT CAGGGTGGATTTCAGGTCCAGGTTCACCACGTCTTCGGGTCGAGCCTTGGGTTTCTTAAG CCCTCCGTCCAGCATCAGCTCAAAGGCAAACGACACATTATGGACCTTCTGGGGGAAGCT GTCGGGGGTCAGGTAGAAGTTGTGCAGGGGTACGAAGTAGTCTTCCAGCAGACCCATGAG CAGAACCAGGTACACACCATCTGCAAACTGGGTCTCTAGTTCCGTCACCTCCAAATTCAG CTTGTTCAAGTGCTTGTTCACAAACGTGATGAGAGACTTCTTCACCACACTGAGCTTGTC CGGGGCGTGGTCGAAGAGCGTGTCGAAGGCGTCCCGCTCAAACCGGCCCATCATCATCTC TGTGGTCGTGGTCAGCTCCTCCGTCACGTGGCTGGAGTGCAGCATGCCTTCCCGCTTCCG CACCACCACCACTTGCACGGAGACGTGTTCTGGAAGGTGGATCGGGGCCCGGAAGTGCGT GGCCAGGGCCACGAGGAGGTGGAGAATGGCCACCAGGTTCTTCCCGTGAATCGAGTCCAC GGTCCACTGGAGCGCCCGGCCGTGGGGCCGAAGCAGGTCCTGCACCGCCTCCAGCACCGC CTGCAGCTTCTGCTTCTGCCCTATTTCAGACTGGGTCACCTCGGCCACATTCAGCTTGCA GTCTGCCAGTTTTTCCAGGAGCTTCTGCAGCACCTGGCCGTCGTACAGGTCCTCCTCCAG CTGCTTCACAATGATCCTCTCCTCCACCAGGACGTCGTTGATCCAGTCGATGAGAACCTT GAGCAGCTCCTTGAATCTGGGGTCATCCCTGGAGGTGGGGTCGATCACCGTGCGCTCCTC GTTCTCCTCGAGCTGGGTGTCTTCGGGGTGAATCTCCACCGAGGCAGGCGACATGGGCGC GTGGATGGCATTTTTGCCTTCTTCCTGCAGGTCGCTCACCTCCCTTGGCCTTCTTCTTCC TCGCCAGCGTGCCGCCCAGCTTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTCTGCTCCGCTGTCACTCCAGGTGCTTGTACTTGGTGAACAGGTTGTAAAGAACCCT CAGGGTGGATTTCAGGTCCAGGTTCACCACGTCTTCGGGTCGAGCCTTGGGTTTCTTAAG CCCTCCGTCCAGCATCAGCTCAAAGGCAAACGACACATTATGGACCTTCTGGGGGAAGCT GTCGGGGGTCAGGTAGAAGTTGTGCAGGGGTACGAAGTAGTCTTCCAGCAGACCCATGAG CAGAACCAGGTACACACCATCTGCAAACTGGGTCTCTAGTTCCGTCACCTCCAAATTCAG CTTGTTCAAGTGCTTGTTCACAAACGTGATGAGAGACTTCTTCACCACACTGAGCTTGTC CGGGGCGTGGTCGAAGAGCGTGTCGAAGGCGTCCCGCTCAAACCGGCCCATCATCATCTC TGTGGTCGTGGTCAGCTCCTCCGTCACGTGGCTGGAGTGCAGCATGCCTTCCCGCTTCCG CACCACCACCACTTGCACGGAGACGTGTTCTGGAAGGTGGATCGGGGCCCGGAAGTGCGT GGCCAGGGCCACGAGGAGGTGGAGAATGGCCACCAGGTTCTTCCCGTGAATCGAGTCCAC GGTCCACTGGAGCGCCCGGCCGTGGGGCCGAAGCAGGTCCTGCACCGCCTCCAGCACCGC CTGCAGCTTCTGCTTCTGCCCTATTTCAGACTGGGTCACCTCGGCCACATTCAGCTTGCA GTCTGCCAGTTTTTCCAGGAGCTTCTGCAGCACCTGGCCGTCGTACAGGTCCTCCTCCAG CTGCTTCACAATGATCCTCTCCTCCACCAGGACGTCGTTGATCCAGTCGATGAGAACCTT GAGCAGCTCCTTGAATCTGGGGTCATCCCTGGAGGTGGGGTCGATCACCGTGCGCTCCTC GTTCTCCTCGAGCTGGGTGTCTTCGGGGTGAATCTCCACCGAGGCAGGCGACATGGGCGC GTGGATGGCATTTTTGCCTTCTTCCTGCAGGTCGCTCACCTCCCTTGGCCTTCTTCTTCC TCGCCAGCGTGCCGCCCAGCTTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 618-735, - strand, RNAz p=0.511563 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 618-735, - strand, RNAz p=0.511563 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 164-271, gnl|bosTau2|chr15 (24029340-24029233) | |
| 164-271, gnl|canFam2|chr21 (38726308-38726436) | |
| 164-271, gnl|danRer3|chrUn (49713243-49713137) | |
| 164-271, gnl|dasNov1|scaffold_30070 (801-929) | |
| 164-271, gnl|echTel1|scaffold_307601 (7152-7244) | |
| 164-271, gnl|fr1|chrUn (66767580-66767700) | |
| 164-271, gnl|galGal2|chr5 (5445508-5445383) | |
| 164-271, gnl|hg17|chr11 (12495718-12495844) | |
| 164-271, gnl|Hg17|chr11 (12495836-12495729) | |
| 164-271, gnl|loxAfr1|scaffold_4330 (90001-90127) | |
| 164-271, gnl|mm7|chr7 (108495662-108495788) | |
| 164-271, gnl|Mm7|chr7 (108495780-108495673) | |
| 164-271, gnl|monDom2|scaffold_10 (63080463-63080589) | |
| 164-271, gnl|oryCun1|scaffold_211736 (88293-88165) | |
| 164-271, gnl|panTro1|chr9 (12751151-12751277) | |
| 164-271, gnl|rheMac2|chr14 (59396484-59396358) | |
| 164-271, gnl|rn3|chr1 (170498994-170499120) | |
| 164-271, gnl|tetNig1|chr13 (605337-605447) | |
| 164-271, gnl|xenTro1|scaffold_1766 (16255-16137) | |
| 478-593, gnl|bosTau2|chr4 (37426866-37426981) | |
| 478-593, gnl|canFam2|chr10 (24642409-24642277) | |
| 478-593, gnl|danRer3|chr5 (3900006-3899876) | |
| 478-593, gnl|dasNov1|scaffold_165694 (569-436) | |
| 478-593, gnl|echTel1|scaffold_171438 (3637-3510) | |
| 478-593, gnl|fr1|chrUn (66766806-66766936) | |
| 478-593, gnl|hg17|chr22 (42853668-42853799) | |
| 478-593, gnl|Hg17|chr22 (42853790-42853675) | |
| 478-593, gnl|loxAfr1|scaffold_70679 (186-63) | |
| 478-593, gnl|mm7|chr15 (84375096-84375227) | |
| 478-593, gnl|Mm7|chr15 (84375218-84375103) | |
| 478-593, gnl|monDom2|scaffold_119 (1876215-1876087) | |
| 478-593, gnl|oryCun1|scaffold_77203 (448-579) | |
| 478-593, gnl|panTro1|chr23 (43152939-43153070) | |
| 478-593, gnl|rheMac2|chr10 (88126847-88126978) | |
| 478-593, gnl|rn3|chr7 (122322068-122322199) | |
| 478-593, gnl|tetNig1|chr13 (9037582-9037705) | |
| 478-593, gnl|xenTro1|scaffold_1022 (195347-195480) | |
| 594-735, gnl|bosTau2|chr4 (37428678-37428819) | |
| 594-735, gnl|canFam2|chr10 (24643259-24643099) | |
| 594-735, gnl|danRer3|chr5 (3902194-3902039) | |
| 594-735, gnl|dasNov1|scaffold_7068 (5383-5203) | |
| 594-735, gnl|echTel1|scaffold_171438 (7669-7502) | |
| 594-735, gnl|fr1|chrUn (66766572-66766727) | |
| 594-735, gnl|hg17|chr22 (42852260-42852441) | |
| 594-735, gnl|Hg17|chr22 (42852408-42852267) | |
| 594-735, gnl|mm7|chr15 (84372700-84372878) | |
| 594-735, gnl|Mm7|chr15 (84372848-84372707) | |
| 594-735, gnl|monDom2|scaffold_119 (1879047-1878866) | |
| 594-735, gnl|oryCun1|scaffold_211736 (104064-103896) | |
| 594-735, gnl|panTro1|chr23 (43151531-43151712) | |
| 594-735, gnl|rheMac2|chr10 (88125447-88125628) | |
| 594-735, gnl|rn3|chr7 (122319862-122320041) | |
| 594-735, gnl|tetNig1|chr13 (9037315-9037495) | |
| 594-735, gnl|xenTro1|scaffold_1022 (195029-195184) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 164-271, gnl|bosTau2|chr15 (24029340-24029233) | |
| 164-271, gnl|canFam2|chr21 (38726308-38726436) | |
| 164-271, gnl|danRer3|chrUn (49713243-49713137) | |
| 164-271, gnl|dasNov1|scaffold_30070 (801-929) | |
| 164-271, gnl|echTel1|scaffold_307601 (7152-7244) | |
| 164-271, gnl|fr1|chrUn (66767580-66767700) | |
| 164-271, gnl|galGal2|chr5 (5445508-5445383) | |
| 164-271, gnl|hg17|chr11 (12495718-12495844) | |
| 164-271, gnl|Hg17|chr11 (12495836-12495729) | |
| 164-271, gnl|loxAfr1|scaffold_4330 (90001-90127) | |
| 164-271, gnl|mm7|chr7 (108495662-108495788) | |
| 164-271, gnl|Mm7|chr7 (108495780-108495673) | |
| 164-271, gnl|monDom2|scaffold_10 (63080463-63080589) | |
| 164-271, gnl|oryCun1|scaffold_211736 (88293-88165) | |
| 164-271, gnl|panTro1|chr9 (12751151-12751277) | |
| 164-271, gnl|rheMac2|chr14 (59396484-59396358) | |
| 164-271, gnl|rn3|chr1 (170498994-170499120) | |
| 164-271, gnl|tetNig1|chr13 (605337-605447) | |
| 164-271, gnl|xenTro1|scaffold_1766 (16255-16137) | |
| 478-593, gnl|bosTau2|chr4 (37426866-37426981) | |
| 478-593, gnl|canFam2|chr10 (24642409-24642277) | |
| 478-593, gnl|danRer3|chr5 (3900006-3899876) | |
| 478-593, gnl|dasNov1|scaffold_165694 (569-436) | |
| 478-593, gnl|echTel1|scaffold_171438 (3637-3510) | |
| 478-593, gnl|fr1|chrUn (66766806-66766936) | |
| 478-593, gnl|hg17|chr22 (42853668-42853799) | |
| 478-593, gnl|Hg17|chr22 (42853790-42853675) | |
| 478-593, gnl|loxAfr1|scaffold_70679 (186-63) | |
| 478-593, gnl|mm7|chr15 (84375096-84375227) | |
| 478-593, gnl|Mm7|chr15 (84375218-84375103) | |
| 478-593, gnl|monDom2|scaffold_119 (1876215-1876087) | |
| 478-593, gnl|oryCun1|scaffold_77203 (448-579) | |
| 478-593, gnl|panTro1|chr23 (43152939-43153070) | |
| 478-593, gnl|rheMac2|chr10 (88126847-88126978) | |
| 478-593, gnl|rn3|chr7 (122322068-122322199) | |
| 478-593, gnl|tetNig1|chr13 (9037582-9037705) | |
| 478-593, gnl|xenTro1|scaffold_1022 (195347-195480) | |
| 594-735, gnl|bosTau2|chr4 (37428678-37428819) | |
| 594-735, gnl|canFam2|chr10 (24643259-24643099) | |
| 594-735, gnl|danRer3|chr5 (3902194-3902039) | |
| 594-735, gnl|dasNov1|scaffold_7068 (5383-5203) | |
| 594-735, gnl|echTel1|scaffold_171438 (7669-7502) | |
| 594-735, gnl|fr1|chrUn (66766572-66766727) | |
| 594-735, gnl|hg17|chr22 (42852260-42852441) | |
| 594-735, gnl|Hg17|chr22 (42852408-42852267) | |
| 594-735, gnl|mm7|chr15 (84372700-84372878) | |
| 594-735, gnl|Mm7|chr15 (84372848-84372707) | |
| 594-735, gnl|monDom2|scaffold_119 (1879047-1878866) | |
| 594-735, gnl|oryCun1|scaffold_211736 (104064-103896) | |
| 594-735, gnl|panTro1|chr23 (43151531-43151712) | |
| 594-735, gnl|rheMac2|chr10 (88125447-88125628) | |
| 594-735, gnl|rn3|chr7 (122319862-122320041) | |
| 594-735, gnl|tetNig1|chr13 (9037315-9037495) | |
| 594-735, gnl|xenTro1|scaffold_1022 (195029-195184) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.198649) | |
| ton (0.1755) | |
| lnt (0.142308) |