Ss1.1-Mixc-0025b14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTATTTAGAAGAGCTGCGCGGCGCGTCTTAGCGGGTGATTAGGGCTGGTTGCCACTCCA GCGCTCAGGCGTCTGCTGACCTTGGCCTCGGGCCGGCGTGGCCTCTCCTGACAGCGCAAG GCGACAGGTGCTGATGCTGGTTTGTGGAAGAAGATTGCTCACAGCTCTGCTGCAGGCTCG GAGGTGGCCCTTTCAACCCTCTAGAGACATGAGGCTGGTACAGTTCCAGGCACCCCACCT GACAGGACCTCATCTGGGCCTGGAGTCAGGGAATGGTGGGGGTGTCATCAACCTCAGTGC CTTCGACCCCACACTGCCCAAGACAATGTTGGAGTTCCTGGAGCAGGGAGAGGCTGCTCT CTCGGTGGCAAGAAGAGCCCTGGCTGCCCAGTTGCCAGTCCTACCACGGTCAGAGGTGAC GATCCTGGCCCCAGTCACACGGCCAGACAAGGTGGTGTGCGTGGGCATGAACTACATGGA CCACTGCAGAGAGCAGAATGTGCCGGTGCCCAAGGAGCCCATCATCTTCAGCAAGTTTGG CAGCTCCATCGTGGGCCCCTACGATGAGATCGTGCTCCCACCTGAGAGCCAGGAGGTGGA CTGGGAGGTGGAGCTGGCCGTGGTCATTGGAAAGAAGGGCAAGCACATCAAGGCTGCAGA TGCCATGGCCCATGTGGCTGGCTTCACTGTGGCACATGACGTGAGTGCTCGTGACTGGCA AATGACACGCAATGGAAAGCAGTGGCTGCTGGGAAAAACCTTTGACACCTTCTGCCCCCT GGGCCCTGCCTTGGTGACCAAGGACAGTGTAGCAGACCCACACAACTTAAAGATCTGCTG CCGCGTGAATGGGAATGTGGTCCAGAGCAGCAATACTAACCAGATGGTGTTTAAGACAGA AGAGCTGATAGCCTGGGTCTCCCGATTTGTCACTGTCTATCCAGGAGACATCATCCTGAC TGGGACCCCCGCAGGAGTCGGTGTATTCAGGAAACCTCCTATCTTCCTCAAGAAGGGTGA TGAAGTCCAGTGTGAGATTGAGGAACTGGGTGTCATCGTCAACAAGGTGGTGTGATGGCC TCTGCTGCCAGCGTGGACTTATGATGAGGTGGGGGCATGTGTTCCCATGGAGCTGAGCAC AGGGAGAGGCCTGGTGCCACCCGAGGATGCTTCTTCCTCAATAAACTTTTATTGTCTGTC AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTATTTAGAAGAGCTGCGCGGCGCGTCTTAGCGGGTGATTAGGGCTGGTTGCCACTCCA GCGCTCAGGCGTCTGCTGACCTTGGCCTCGGGCCGGCGTGGCCTCTCCTGACAGCGCAAG GCGACAGGTGCTGATGCTGGTTTGTGGAAGAAGATTGCTCACAGCTCTGCTGCAGGCTCG GAGGTGGCCCTTTCAACCCTCTAGAGACATGAGGCTGGTACAGTTCCAGGCACCCCACCT GACAGGACCTCATCTGGGCCTGGAGTCAGGGAATGGTGGGGGTGTCATCAACCTCAGTGC CTTCGACCCCACACTGCCCAAGACAATGTTGGAGTTCCTGGAGCAGGGAGAGGCTGCTCT CTCGGTGGCAAGAAGAGCCCTGGCTGCCCAGTTGCCAGTCCTACCACGGTCAGAGGTGAC GATCCTGGCCCCAGTCACACGGCCAGACAAGGTGGTGTGCGTGGGCATGAACTACATGGA CCACTGCAGAGAGCAGAATGTGCCGGTGCCCAAGGAGCCCATCATCTTCAGCAAGTTTGG CAGCTCCATCGTGGGCCCCTACGATGAGATCGTGCTCCCACCTGAGAGCCAGGAGGTGGA CTGGGAGGTGGAGCTGGCCGTGGTCATTGGAAAGAAGGGCAAGCACATCAAGGCTGCAGA TGCCATGGCCCATGTGGCTGGCTTCACTGTGGCACATGACGTGAGTGCTCGTGACTGGCA AATGACACGCAATGGAAAGCAGTGGCTGCTGGGAAAAACCTTTGACACCTTCTGCCCCCT GGGCCCTGCCTTGGTGACCAAGGACAGTGTAGCAGACCCACACAACTTAAAGATCTGCTG CCGCGTGAATGGGAATGTGGTCCAGAGCAGCAATACTAACCAGATGGTGTTTAAGACAGA AGAGCTGATAGCCTGGGTCTCCCGATTTGTCACTGTCTATCCAGGAGACATCATCCTGAC TGGGACCCCCGCAGGAGTCGGTGTATTCAGGAAACCTCCTATCTTCCTCAAGAAGGGTGA TGAAGTCCAGTGTGAGATTGAGGAACTGGGTGTCATCGTCAACAAGGTGGTGTGATGGCC TCTGCTGCCAGCGTGGACTTATGATGAGGTGGGGGCATGTGTTCCCATGGAGCTGAGCAC AGGGAGAGGCCTGGTGCCACCCGAGGATGCTTCTTCCTCAATAAACTTTTATTGTCTGTC AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 374-596, gnl|bosTau2|chr11 (131562-131784) | |
| 374-596, gnl|Hg17|chr2 (95494561-95494783) | |
| 374-596, gnl|Mm7|chr2 (127181457-127181235) | |
| 651-815, gnl|bosTau2|chr11 (135611-135775) | |
| 651-815, gnl|canFam2|chr17 (37806585-37806424) | |
| 651-815, gnl|danRer3|chr8 (36905867-36906021) | |
| 651-815, gnl|dasNov1|scaffold_198365 (605-450) | |
| 651-815, gnl|echTel1|scaffold_210889 (5610-5766) | |
| 651-815, gnl|fr1|chrUn (174223724-174223839) | |
| 651-815, gnl|galGal2|chrUn (28146182-28146359) | |
| 651-815, gnl|hg17|chr2 (95498436-95498594) | |
| 651-815, gnl|Hg17|chr2 (95498484-95498648) | |
| 651-815, gnl|loxAfr1|scaffold_7080 (19596-19753) | |
| 651-815, gnl|mm7|chr2 (127179175-127179022) | |
| 651-815, gnl|Mm7|chr2 (127179127-127178966) | |
| 651-815, gnl|monDom2|scaffold_1 (66891736-66891897) | |
| 651-815, gnl|panTro1|chr12 (98488772-98488930) | |
| 651-815, gnl|rheMac2|chr13 (96499867-96500024) | |
| 651-815, gnl|rn3|chr3 (114846959-114846806) | |
| 651-815, gnl|tetNig1|chr12 (3523893-3523761) | |
| 651-815, gnl|xenTro1|scaffold_407 (125622-125465) | |
| 1011-1174, gnl|bosTau2|chr11 (137217-137367) | |
| 1011-1174, gnl|canFam2|chr17 (37805022-37804908) | |
| 1011-1174, gnl|danRer3|chr8 (36916556-36916624) | |
| 1011-1174, gnl|echTel1|scaffold_210889 (7177-7263) | |
| 1011-1174, gnl|fr1|chrUn (174224304-174224403) | |
| 1011-1174, gnl|galGal2|chrUn (28147060-28147120) | |
| 1011-1174, gnl|hg17|chr12 (69352845-69352965) | |
| 1011-1174, gnl|Hg17|chr2 (95500515-95500691) | |
| 1011-1174, gnl|loxAfr1|scaffold_7080 (21418-21485) | |
| 1011-1174, gnl|mm7|chr2 (127177262-127177140) | |
| 1011-1174, gnl|Mm7|chr2 (127177261-127177109) | |
| 1011-1174, gnl|monDom2|scaffold_1 (66893892-66893956) | |
| 1011-1174, gnl|oryCun1|scaffold_204012 (38738-38842) | |
| 1011-1174, gnl|panTro1|chr10 (71017743-71017863) | |
| 1011-1174, gnl|rheMac2|chr11 (67625702-67625822) | |
| 1011-1174, gnl|rn3|chr3 (114845122-114844999) | |
| 1011-1174, gnl|tetNig1|chr12 (3522717-3522637) | |
| 1011-1174, gnl|xenTro1|scaffold_407 (122261-122202) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 374-596, gnl|bosTau2|chr11 (131562-131784) | |
| 374-596, gnl|Hg17|chr2 (95494561-95494783) | |
| 374-596, gnl|Mm7|chr2 (127181457-127181235) | |
| 651-815, gnl|bosTau2|chr11 (135611-135775) | |
| 651-815, gnl|canFam2|chr17 (37806585-37806424) | |
| 651-815, gnl|danRer3|chr8 (36905867-36906021) | |
| 651-815, gnl|dasNov1|scaffold_198365 (605-450) | |
| 651-815, gnl|echTel1|scaffold_210889 (5610-5766) | |
| 651-815, gnl|fr1|chrUn (174223724-174223839) | |
| 651-815, gnl|galGal2|chrUn (28146182-28146359) | |
| 651-815, gnl|hg17|chr2 (95498436-95498594) | |
| 651-815, gnl|Hg17|chr2 (95498484-95498648) | |
| 651-815, gnl|loxAfr1|scaffold_7080 (19596-19753) | |
| 651-815, gnl|mm7|chr2 (127179175-127179022) | |
| 651-815, gnl|Mm7|chr2 (127179127-127178966) | |
| 651-815, gnl|monDom2|scaffold_1 (66891736-66891897) | |
| 651-815, gnl|panTro1|chr12 (98488772-98488930) | |
| 651-815, gnl|rheMac2|chr13 (96499867-96500024) | |
| 651-815, gnl|rn3|chr3 (114846959-114846806) | |
| 651-815, gnl|tetNig1|chr12 (3523893-3523761) | |
| 651-815, gnl|xenTro1|scaffold_407 (125622-125465) | |
| 1011-1174, gnl|bosTau2|chr11 (137217-137367) | |
| 1011-1174, gnl|canFam2|chr17 (37805022-37804908) | |
| 1011-1174, gnl|danRer3|chr8 (36916556-36916624) | |
| 1011-1174, gnl|echTel1|scaffold_210889 (7177-7263) | |
| 1011-1174, gnl|fr1|chrUn (174224304-174224403) | |
| 1011-1174, gnl|galGal2|chrUn (28147060-28147120) | |
| 1011-1174, gnl|hg17|chr12 (69352845-69352965) | |
| 1011-1174, gnl|Hg17|chr2 (95500515-95500691) | |
| 1011-1174, gnl|loxAfr1|scaffold_7080 (21418-21485) | |
| 1011-1174, gnl|mm7|chr2 (127177262-127177140) | |
| 1011-1174, gnl|Mm7|chr2 (127177261-127177109) | |
| 1011-1174, gnl|monDom2|scaffold_1 (66893892-66893956) | |
| 1011-1174, gnl|oryCun1|scaffold_204012 (38738-38842) | |
| 1011-1174, gnl|panTro1|chr10 (71017743-71017863) | |
| 1011-1174, gnl|rheMac2|chr11 (67625702-67625822) | |
| 1011-1174, gnl|rn3|chr3 (114845122-114844999) | |
| 1011-1174, gnl|tetNig1|chr12 (3522717-3522637) | |
| 1011-1174, gnl|xenTro1|scaffold_407 (122261-122202) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| cki (0.660939) | |
| mas (0.630915) | |
| fli (0.405762) | |
| cov (0.396458) | |
| jej (0.395687) | |
| eep (0.367692) | |
| nje (0.33184) | |
| hyp (0.285673) | |
| csk (0.281492) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| hea (0.204499) | |
| col (0.195008) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| kid (0.129735) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.660939) | |
| mas (0.630915) | |
| fli (0.405762) | |
| cov (0.396458) | |
| jej (0.395687) | |
| eep (0.367692) | |
| nje (0.33184) | |
| hyp (0.285673) | |
| csk (0.281492) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| hea (0.204499) | |
| col (0.195008) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| kid (0.129735) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| nbm (0.0993246) |