Non-Coding RNA Search

Ss1.1-Mixc-0025c04.5

Sequence:


               
               GGGCATCGCCGCAGGGGACAGAGGGACGCACGCTCCGTTGAGCACCTCATCTTTCGCTTG
GACGCCAGCGCGAAGGACGCGATGTTGGGGCTCTCCCGCCAGCTTCTTTGGGCCGTCGGC
TGCCTGGCCGCGCTCTGCGTGCTGACAGCGGCGAAGAACAGCACCATCCTGCCTCCGAGT
ACGACTACACCCTGGCTTTCACCGCCCACCACCCAGACAACCTCCGCGCCGCCGAAGACG
CTCCCCACTCCAGCACCAGAAATCTGTGAAAATCGCAACAGCTGTATTTCTTGTTTTGAT
GCTAATAATACCTGCTTTTGGATAGAATGTAAAGGTAAAAGCTACTGTTCAGATAATTCA
ACAGTTAGTGATTGCCACGTGGTGAACGGCACAGACTTCTGTTCTGGGCCCACTGTCACA
CCGTTGCCAACCAATTCTACAGCTAAAACCACAACTCTGCCTTCCCCTTCTTCGGCTTCC
ACCACAGCTACTACATCAGGTACAACTAATACCACCTTAGCTCCAACTACTCAACCTATG
CGGAAGTCTACCTTTGACGCAGCCAGTTTCATTGGAGGAATTGTCCTTGTCTTGGGTGTG
CAGGCTGTAATTTTCTTTCTCTATAAATTCTGCAAATCTAAAGAACGAAACTACCACACT
CTGTAAACAGACCTGCTAAGTGAACAAGGACTGGCGTGTAACTCACTGAAACCAAAATAT
CTTTCAAGATGTCCCACATGGAAGACGCTATTCTAGGATCTTTAAATTTTCAAAGGATGC
GTATAGGAGCATCCATCAACCTTGAAGAAAAATCAGTTAAATCATTTTGCTCAATGGGAA
TATTTAAAATATTCTGCATGAATCCTTGTAGCTGTCTTCTTTTACTTTAAATGGCTGCTG
CTGTGGGATTATGTTCTCTCTTCTTGACATGCCAAATGTAACTCTGTAAGTGATGGAAAA
CATTGTCCTGCGCAGACAACCTCATGACTCTTTGGCAGTTTAAATGTAGTCATTTTAAAG
CCTGTAAGCTGCATTGTTTTCATCCTAACTCAGGATGTAGTTTAGTGACCAGAATTGAGA
AGAATGTGCCAAATGAGCATCAATCAGGTGGATTTTTGGCTATTATTTCAAAAGTGGAAT
AAATTTATAAATTTAGTATCCTTAGAGTAAAATTCTGTGCTTGATAACTATTATTTTTTC
TACATTAGAAAAAAGATGCCACACAGGGAATTACATTCCAGGTTTAAAGAAATGAATGGA
GAGGATACAAAAACATAAAAGTATAGCAGGTTATTGTTCATACTTGTAAAGCACCTTATA
TCACTGAGAAAATAAAGAACAGTGCCTTAAAAGACAGACTGAAAGGTAGACTGTAACTTA
AAATGTTGATTTGTTCTTTCACATTAATGAAGGGAAAGGTTGGTCCGAGGATACAACTGT
TGATGTGAGCAGTAGTAATCCTTTTAGATACCATATTTAATTGAAAACCTACCTACTTTA
TTTCAAGCCTGAGTAACTTAAAGGATGTTATACAAAGTCAAAAGCCTTCATCTATTAAAT
CTCCCAACCTTTTTCTTATGGCTGTTAAAAAGTATAGAGCTAAAGTTGATTTAATTATAT
GTTCCTTTGTACTTCAAAAAAGATATCCTGACACTGTTGTACCATATAAGGATTTCCACC
AAGCTTTCTATTAGGCAAGTAATTTCTATTAGGCAAGAAAGAAATAAGTTTAGAGTCATT
TACTAACTCTTTAAATGAGACAGTCATTTTAAGTTTTGAGACAGCAAATGTCAACAGTGT
AATTTCAGGAAATCTAAGGATTTTAGTTGATCAAATTACTGTAGATTTTAATGATTGCCC
AGATAAACAGATTGTACTTTTTCTTTCTCCTCTCCTATCCTTTCTTCTTAATTTCAGTTT
CTGTAGTATGGTAAACATGCATATTTCTCTATTTCTTTAGTTTCCTTATGAAGCACAAGT
ATTTTCAGGTTTAGAGGGATACTTGTTCCCTGCCTTTGACATATTGGATTAGTTCAGGGG
CTTAAATAAGTTGAAAATGAGCTTTTGCTTTTCTAGGTCATTAAGGGTTTTTGTTTTAGT
TTCTTTAGCCTATAGTGGCTGAGTTTAGCACTTGGTTTTCAGTATTTTATAGTAAGAAAC
GACAAGTTGCTTTGGTCCATTTGATAAGCCAAAATTCCTTACATTTAGATAATTAAAGGT
TCTTAAAATGAAGATTTACTGTTTCTTTGTTACTTGCTGGTACAGCTAAAGTTGTTTTAC
TTGCACATTTGTACATACACCTAATGTTTTCAAGTGCCTTAATTGTTTAAAATCTCTGGC
ATCAAAGGTTTTTGGGAAAAGGTAGGCTTACCTCACATTTTTGTGTTCCCCTTAGTAGTA
ACATTCTAGGTACCTCACAAAAATGTTTCTTAACGGTGCCATGGCTGTTAGTTTTTAGTG
AGCGCTATAAGATACAAAATTCAGTTGAAAATAGAATTTCCATTCTCCCAAAGTGGTAAA
AATTAGCTATAATGGTATAATTGTCACTTACCTAGATGTGAATACGTTGCTAATGTTAAC
ACTATAGCTATTTTTGTGAAAATGTAGCTGATAAAGCTTCTCCTGTAATTTTGAAGACTG
CTCTAACAGAATCATAATTTGGAATTAGATTTTACAAGAAGAGCTCTTACAACAGAACTC
ACAGCCTTTCCCCTCTTCCTTTTGCAGTTCAGTATCTTGAGCCATTAATAATTTTTGGGT
TTTTTAATCCAGAAGGTATATAGAAACCTTTTCAGATTTTTCATCTGATTTGTTCATGCA
GATGTAGTTCTATTAAAATCCCTATTTTACCTTACAAATATTTGTTGCACAGGAAGACAC
ACTGCTGTATTTAGAAATTTCTATTTTAGTTCATTAAAAACTGCAAAACCAATCTGTATC
ATGTACCAAACTGATTTAAAATAAATACATGTTTATTGGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCATCGCCGCAGGGGACAGAGGGACGCACGCTCCGTTGAGCACCTCATCTTTCGCTTG
GACGCCAGCGCGAAGGACGCGATGTTGGGGCTCTCCCGCCAGCTTCTTTGGGCCGTCGGC
TGCCTGGCCGCGCTCTGCGTGCTGACAGCGGCGAAGAACAGCACCATCCTGCCTCCGAGT
ACGACTACACCCTGGCTTTCACCGCCCACCACCCAGACAACCTCCGCGCCGCCGAAGACG
CTCCCCACTCCAGCACCAGAAATCTGTGAAAATCGCAACAGCTGTATTTCTTGTTTTGAT
GCTAATAATACCTGCTTTTGGATAGAATGTAAAGGTAAAAGCTACTGTTCAGATAATTCA
ACAGTTAGTGATTGCCACGTGGTGAACGGCACAGACTTCTGTTCTGGGCCCACTGTCACA
CCGTTGCCAACCAATTCTACAGCTAAAACCACAACTCTGCCTTCCCCTTCTTCGGCTTCC
ACCACAGCTACTACATCAGGTACAACTAATACCACCTTAGCTCCAACTACTCAACCTATG
CGGAAGTCTACCTTTGACGCAGCCAGTTTCATTGGAGGAATTGTCCTTGTCTTGGGTGTG
CAGGCTGTAATTTTCTTTCTCTATAAATTCTGCAAATCTAAAGAACGAAACTACCACACT
CTGTAAACAGACCTGCTAAGTGAACAAGGACTGGCGTGTAACTCACTGAAACCAAAATAT
CTTTCAAGATGTCCCACATGGAAGACGCTATTCTAGGATCTTTAAATTTTCAAAGGATGC
GTATAGGAGCATCCATCAACCTTGAAGAAAAATCAGTTAAATCATTTTGCTCAATGGGAA
TATTTAAAATATTCTGCATGAATCCTTGTAGCTGTCTTCTTTTACTTTAAATGGCTGCTG
CTGTGGGATTATGTTCTCTCTTCTTGACATGCCAAATGTAACTCTGTAAGTGATGGAAAA
CATTGTCCTGCGCAGACAACCTCATGACTCTTTGGCAGTTTAAATGTAGTCATTTTAAAG
CCTGTAAGCTGCATTGTTTTCATCCTAACTCAGGATGTAGTTTAGTGACCAGAATTGAGA
AGAATGTGCCAAATGAGCATCAATCAGGTGGATTTTTGGCTATTATTTCAAAAGTGGAAT
AAATTTATAAATTTAGTATCCTTAGAGTAAAATTCTGTGCTTGATAACTATTATTTTTTC
TACATTAGAAAAAAGATGCCACACAGGGAATTACATTCCAGGTTTAAAGAAATGAATGGA
GAGGATACAAAAACATAAAAGTATAGCAGGTTATTGTTCATACTTGTAAAGCACCTTATA
TCACTGAGAAAATAAAGAACAGTGCCTTAAAAGACAGACTGAAAGGTAGACTGTAACTTA
AAATGTTGATTTGTTCTTTCACATTAATGAAGGGAAAGGTTGGTCCGAGGATACAACTGT
TGATGTGAGCAGTAGTAATCCTTTTAGATACCATATTTAATTGAAAACCTACCTACTTTA
TTTCAAGCCTGAGTAACTTAAAGGATGTTATACAAAGTCAAAAGCCTTCATCTATTAAAT
CTCCCAACCTTTTTCTTATGGCTGTTAAAAAGTATAGAGCTAAAGTTGATTTAATTATAT
GTTCCTTTGTACTTCAAAAAAGATATCCTGACACTGTTGTACCATATAAGGATTTCCACC
AAGCTTTCTATTAGGCAAGTAATTTCTATTAGGCAAGAAAGAAATAAGTTTAGAGTCATT
TACTAACTCTTTAAATGAGACAGTCATTTTAAGTTTTGAGACAGCAAATGTCAACAGTGT
AATTTCAGGAAATCTAAGGATTTTAGTTGATCAAATTACTGTAGATTTTAATGATTGCCC
AGATAAACAGATTGTACTTTTTCTTTCTCCTCTCCTATCCTTTCTTCTTAATTTCAGTTT
CTGTAGTATGGTAAACATGCATATTTCTCTATTTCTTTAGTTTCCTTATGAAGCACAAGT
ATTTTCAGGTTTAGAGGGATACTTGTTCCCTGCCTTTGACATATTGGATTAGTTCAGGGG
CTTAAATAAGTTGAAAATGAGCTTTTGCTTTTCTAGGTCATTAAGGGTTTTTGTTTTAGT
TTCTTTAGCCTATAGTGGCTGAGTTTAGCACTTGGTTTTCAGTATTTTATAGTAAGAAAC
GACAAGTTGCTTTGGTCCATTTGATAAGCCAAAATTCCTTACATTTAGATAATTAAAGGT
TCTTAAAATGAAGATTTACTGTTTCTTTGTTACTTGCTGGTACAGCTAAAGTTGTTTTAC
TTGCACATTTGTACATACACCTAATGTTTTCAAGTGCCTTAATTGTTTAAAATCTCTGGC
ATCAAAGGTTTTTGGGAAAAGGTAGGCTTACCTCACATTTTTGTGTTCCCCTTAGTAGTA
ACATTCTAGGTACCTCACAAAAATGTTTCTTAACGGTGCCATGGCTGTTAGTTTTTAGTG
AGCGCTATAAGATACAAAATTCAGTTGAAAATAGAATTTCCATTCTCCCAAAGTGGTAAA
AATTAGCTATAATGGTATAATTGTCACTTACCTAGATGTGAATACGTTGCTAATGTTAAC
ACTATAGCTATTTTTGTGAAAATGTAGCTGATAAAGCTTCTCCTGTAATTTTGAAGACTG
CTCTAACAGAATCATAATTTGGAATTAGATTTTACAAGAAGAGCTCTTACAACAGAACTC
ACAGCCTTTCCCCTCTTCCTTTTGCAGTTCAGTATCTTGAGCCATTAATAATTTTTGGGT
TTTTTAATCCAGAAGGTATATAGAAACCTTTTCAGATTTTTCATCTGATTTGTTCATGCA
GATGTAGTTCTATTAAAATCCCTATTTTACCTTACAAATATTTGTTGCACAGGAAGACAC
ACTGCTGTATTTAGAAATTTCTATTTTAGTTCATTAAAAACTGCAAAACCAATCTGTATC
ATGTACCAAACTGATTTAAAATAAATACATGTTTATTGGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12833036|dbj|BAB22362.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12833036|dbj|BAB22362.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1950-2069, + strand, RNAz p=0.858357

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1950-2069, + strand, RNAz p=0.858357

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006016, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006016, +

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               11-1216, gnl|bosTau2|chr12 (37785571-37786734)
               


               
               1269-2403, gnl|bosTau2|chr12 (37786734-37787862)
               

               
               1269-2403, gnl|Hg17|chr6 (109796214-109795008)
               

               
               1269-2403, gnl|Mm7|chr10 (41340052-41341126)
               


               
               2436-2966, gnl|bosTau2|chr12 (37787946-37788475)
               

               
               2436-2966, gnl|Hg17|chr6 (109794981-109794430)
               

               
               2436-2966, gnl|Mm7|chr10 (41341161-41341686)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1216, gnl|bosTau2|chr12 (37785571-37786734)
               


               
               1269-2403, gnl|bosTau2|chr12 (37786734-37787862)
               

               
               1269-2403, gnl|Hg17|chr6 (109796214-109795008)
               

               
               1269-2403, gnl|Mm7|chr10 (41340052-41341126)
               


               
               2436-2966, gnl|bosTau2|chr12 (37787946-37788475)
               

               
               2436-2966, gnl|Hg17|chr6 (109794981-109794430)
               

               
               2436-2966, gnl|Mm7|chr10 (41341161-41341686)

Expressed library(ies): 52 entry(ies)

More info

Expressed library(ies): 52 entry(ies)

Help | Less info


               
               liv (2.34055)
               

               
               kid (2.33524)
               

               
               pro (2.04813)
               

               
               tra (1.6002)
               

               
               lin (1.45603)
               

               
               eye (1.02302)
               

               
               rec (0.865351)
               

               
               fat (0.737137)
               

               
               pla (0.66836)
               

               
               sag (0.548145)
               

               
               ova (0.516529)
               

               
               fhi (0.508733)
               

               
               thg (0.507164)
               

               
               tbr (0.462535)
               

               
               amn (0.417711)
               

               
               ute (0.398353)
               

               
               aor (0.390549)
               

               
               nje (0.33184)
               

               
               ctl (0.306138)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               nbm (0.297974)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 52 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (2.34055)
               

               
               kid (2.33524)
               

               
               pro (2.04813)
               

               
               tra (1.6002)
               

               
               lin (1.45603)
               

               
               eye (1.02302)
               

               
               rec (0.865351)
               

               
               fat (0.737137)
               

               
               pla (0.66836)
               

               
               sag (0.548145)
               

               
               ova (0.516529)
               

               
               fhi (0.508733)
               

               
               thg (0.507164)
               

               
               tbr (0.462535)
               

               
               amn (0.417711)
               

               
               ute (0.398353)
               

               
               aor (0.390549)
               

               
               nje (0.33184)
               

               
               ctl (0.306138)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               nbm (0.297974)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	11-1216, gnl\|bosTau2\|chr12 (37785571-37786734)

	1269-2403, gnl\|bosTau2\|chr12 (37786734-37787862)
	1269-2403, gnl\|Hg17\|chr6 (109796214-109795008)
	1269-2403, gnl\|Mm7\|chr10 (41340052-41341126)

	2436-2966, gnl\|bosTau2\|chr12 (37787946-37788475)
	2436-2966, gnl\|Hg17\|chr6 (109794981-109794430)
	2436-2966, gnl\|Mm7\|chr10 (41341161-41341686)

	liv (2.34055)
	kid (2.33524)
	pro (2.04813)
	tra (1.6002)
	lin (1.45603)
	eye (1.02302)
	rec (0.865351)
	fat (0.737137)
	pla (0.66836)
	sag (0.548145)
	ova (0.516529)
	fhi (0.508733)
	thg (0.507164)
	tbr (0.462535)
	amn (0.417711)
	ute (0.398353)
	aor (0.390549)
	nje (0.33184)
	ctl (0.306138)
	lun (0.300978)
	bfe (0.299715)
	nbm (0.297974)
	ldo (0.291008)
	spl (0.286369)
	nmm (0.265604)
	ret (0.257467)
	mgp (0.230681)
	cty (0.20816)
	fcc (0.197785)
	eje (0.197668)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	ton (0.1755)
	sin (0.174948)
	csp (0.161186)
	mga (0.160205)
	cli (0.152812)
	isp (0.150376)
	pty (0.142714)
	lyg (0.133103)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)
	spc (0.113366)
	jej (0.0989218)