Ss1.1-Mixc-0025d05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCCCGCGATCCACTTGCTGGAGGGAGACTTGGACAAGGCCATCGAAATCTACAAGAAA GCAGTAGAGTTCTCTCCAGAAAATACAGAACTTCTTACAACTTTAGGATTACTCTATCTA CAGCTTGGCATTTACCAGAAGGCATTTGAACATCTTGGAAATGCACTGACTTATGACCCT ACCAACTACAAGGCCATCTTGGCGGCAGGCAGCATGATGCAGACCCATGGGGACTTTGAG GTTGCCCTCACCAAATACAGAGTTGTAGCTTGTGCTGTTCCAGAAAGTCCTCCCCTCTGG AATAACATCGGAATGTGTTTCTTTGGCAAGAAGAAATACGTGGCAGCTATCAGCTGCCTG AAACGAGCCAACTACTTGGCACCCTTCGATTGGAAGATTCTGTATAATTTGGGCCTCGTA CACTTGACTATGCAGCAGTATGCCTCAGCTTTCCATTTCCTCAGTGCAGCCATCAACTTC CAGCCAAAGATGGGGGAGCTGTACATGCTCTTGGCTGTAGTGAGATGAAGCTTTAAATGC CATCTGTCACAGAAGAGAGCCTATGCAGAAGCAGTGCGCCTGGATAAGTGTAACCCTTTA GTAAACCTCAACTATGCTGTGCTGCTGTACAACCAGGGCGAGAAGAGGGGTGCCCTGGCC CAGTATCAGGAGATGGAGAAGAAAGTCAACCTACTCAAGGACAGTAGCTCTCTGGAGTTT GATCCGGAGATGGTGGAGATGGCCCAGAAGCTGGGAGCTGCTCTTCAGGCTGGCGAGGCA CTGGTATGGACTAAACCAGTTAAAGATCCCAAGTCAAAGCACCGGACTCCTTCTACCAGC AAAACCACCAGTGTCCAGCAGCCTCTGGGCTCTAATCAGGCCCTAGGACAGGCAATGTCT TCAGCAGCCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCCCGCGATCCACTTGCTGGAGGGAGACTTGGACAAGGCCATCGAAATCTACAAGAAA GCAGTAGAGTTCTCTCCAGAAAATACAGAACTTCTTACAACTTTAGGATTACTCTATCTA CAGCTTGGCATTTACCAGAAGGCATTTGAACATCTTGGAAATGCACTGACTTATGACCCT ACCAACTACAAGGCCATCTTGGCGGCAGGCAGCATGATGCAGACCCATGGGGACTTTGAG GTTGCCCTCACCAAATACAGAGTTGTAGCTTGTGCTGTTCCAGAAAGTCCTCCCCTCTGG AATAACATCGGAATGTGTTTCTTTGGCAAGAAGAAATACGTGGCAGCTATCAGCTGCCTG AAACGAGCCAACTACTTGGCACCCTTCGATTGGAAGATTCTGTATAATTTGGGCCTCGTA CACTTGACTATGCAGCAGTATGCCTCAGCTTTCCATTTCCTCAGTGCAGCCATCAACTTC CAGCCAAAGATGGGGGAGCTGTACATGCTCTTGGCTGTAGTGAGATGAAGCTTTAAATGC CATCTGTCACAGAAGAGAGCCTATGCAGAAGCAGTGCGCCTGGATAAGTGTAACCCTTTA GTAAACCTCAACTATGCTGTGCTGCTGTACAACCAGGGCGAGAAGAGGGGTGCCCTGGCC CAGTATCAGGAGATGGAGAAGAAAGTCAACCTACTCAAGGACAGTAGCTCTCTGGAGTTT GATCCGGAGATGGTGGAGATGGCCCAGAAGCTGGGAGCTGCTCTTCAGGCTGGCGAGGCA CTGGTATGGACTAAACCAGTTAAAGATCCCAAGTCAAAGCACCGGACTCCTTCTACCAGC AAAACCACCAGTGTCCAGCAGCCTCTGGGCTCTAATCAGGCCCTAGGACAGGCAATGTCT TCAGCAGCCACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 767-886, - strand, RNAz p=0.910881 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 767-886, - strand, RNAz p=0.910881 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 346-517, gnl|bosTau2|chr10 (10993617-10993788) | |
| 346-517, gnl|canFam2|chr30 (39103152-39103349) | |
| 346-517, gnl|danRer3|chr25 (901119-900940) | |
| 346-517, gnl|dasNov1|scaffold_10596 (66390-66193) | |
| 346-517, gnl|echTel1|scaffold_316778 (44752-44555) | |
| 346-517, gnl|fr1|chrUn (5094131-5094325) | |
| 346-517, gnl|galGal2|chr10 (963782-963588) | |
| 346-517, gnl|hg17|chr15 (70810935-70811132) | |
| 346-517, gnl|Hg17|chr15 (70810949-70811120) | |
| 346-517, gnl|loxAfr1|scaffold_20201 (7171-6974) | |
| 346-517, gnl|mm7|chr9 (59354299-59354104) | |
| 346-517, gnl|Mm7|chr9 (59354285-59354114) | |
| 346-517, gnl|monDom2|scaffold_41 (6534814-6534628) | |
| 346-517, gnl|oryCun1|scaffold_160879 (26558-26363) | |
| 346-517, gnl|panTro1|chr16_random (19920622-19920819) | |
| 346-517, gnl|rheMac2|chr7 (51410294-51410491) | |
| 346-517, gnl|rn3|chr8 (63177093-63176898) | |
| 346-517, gnl|tetNig1|chr5 (10918947-10918753) | |
| 346-517, gnl|xenTro1|scaffold_62 (469949-469752) | |
| 728-912, gnl|bosTau2|chr10 (10996342-10996526) | |
| 728-912, gnl|Hg17|chr15 (70816154-70816338) | |
| 728-912, gnl|Mm7|chr9 (59350517-59350334) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 346-517, gnl|bosTau2|chr10 (10993617-10993788) | |
| 346-517, gnl|canFam2|chr30 (39103152-39103349) | |
| 346-517, gnl|danRer3|chr25 (901119-900940) | |
| 346-517, gnl|dasNov1|scaffold_10596 (66390-66193) | |
| 346-517, gnl|echTel1|scaffold_316778 (44752-44555) | |
| 346-517, gnl|fr1|chrUn (5094131-5094325) | |
| 346-517, gnl|galGal2|chr10 (963782-963588) | |
| 346-517, gnl|hg17|chr15 (70810935-70811132) | |
| 346-517, gnl|Hg17|chr15 (70810949-70811120) | |
| 346-517, gnl|loxAfr1|scaffold_20201 (7171-6974) | |
| 346-517, gnl|mm7|chr9 (59354299-59354104) | |
| 346-517, gnl|Mm7|chr9 (59354285-59354114) | |
| 346-517, gnl|monDom2|scaffold_41 (6534814-6534628) | |
| 346-517, gnl|oryCun1|scaffold_160879 (26558-26363) | |
| 346-517, gnl|panTro1|chr16_random (19920622-19920819) | |
| 346-517, gnl|rheMac2|chr7 (51410294-51410491) | |
| 346-517, gnl|rn3|chr8 (63177093-63176898) | |
| 346-517, gnl|tetNig1|chr5 (10918947-10918753) | |
| 346-517, gnl|xenTro1|scaffold_62 (469949-469752) | |
| 728-912, gnl|bosTau2|chr10 (10996342-10996526) | |
| 728-912, gnl|Hg17|chr15 (70816154-70816338) | |
| 728-912, gnl|Mm7|chr9 (59350517-59350334) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |