Non-Coding RNA Search

Ss1.1-Mixc-0025d21.5

Sequence:


               
               CTTTGTTCAAAGCTTTGGTAGGTGTCAGGATTAGGCAGCATCTCTTAAGGGCGGTATTGA
GATCTCTGCTCTTGGATGTACTCGTAGAGCGGGCTGGAGCGCACTGGAGCACTGGCAAAC
TGACCCTTGCCAGGTTCCAGAACCTGTCGACGCCCCTTGTCTTCCTCCCAGACCTGGTCG
CGGCTCTGCTGCAGGTCGCGCTCTTGACGACGCCTCTGCTCCTCTCTCTCCAGGAGTCTC
TGCTCTTCTTGACGCAATCCTTTTTCCTGACGACGCCTCTTCTCCCCAGCAAACTGCTCC
TCTGCGCTATACTGCTGATCTCGCTCCAGCCGGCGCTTCAGTTCTTCCCGTTCCTCACGC
TGCAGCAGCTTTTCTTGTTGGCTAAACTTCCTGTCCTGCTCCTGGACGCGGCGCTTTTTT
TCCTCTCCTTCCTGCTGGAGGCTCTGCTCTTCCTCTAGGAACTTCCTGTCTCTCTGCCTT
TGACCTCTCTGTTCCTCTTCTTGCTCTGCGCGCCTCAGTTGTTCCTCCCAGGAGAAGGCA
CTCTGTTCCTGGTGACGCACCTGTTCTTCCCTTTCCTGACGGAGCTGTTCCTCTTCGCGG
AACCTTCTGTCGCGCTCCTGGCGGCCAAGTCGTTGTTCTTCATCCCTTTCCTGACGGAGC
TGTTCCTCTTCGCGGAACCTTCTGTCGCGCTCCTGGCGGCGCAACTGCTCTTCATCCCTT
TCCTGACGGAGCTGTTCCTCTTCGCGGAACTTTCTGTCGCGCTCCTGGCGGCCAAGTCGC
TGTTCATCCCTTTCCTGACGGAGCTGTTCCTCTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGTTCAAAGCTTTGGTAGGTGTCAGGATTAGGCAGCATCTCTTAAGGGCGGTATTGA
GATCTCTGCTCTTGGATGTACTCGTAGAGCGGGCTGGAGCGCACTGGAGCACTGGCAAAC
TGACCCTTGCCAGGTTCCAGAACCTGTCGACGCCCCTTGTCTTCCTCCCAGACCTGGTCG
CGGCTCTGCTGCAGGTCGCGCTCTTGACGACGCCTCTGCTCCTCTCTCTCCAGGAGTCTC
TGCTCTTCTTGACGCAATCCTTTTTCCTGACGACGCCTCTTCTCCCCAGCAAACTGCTCC
TCTGCGCTATACTGCTGATCTCGCTCCAGCCGGCGCTTCAGTTCTTCCCGTTCCTCACGC
TGCAGCAGCTTTTCTTGTTGGCTAAACTTCCTGTCCTGCTCCTGGACGCGGCGCTTTTTT
TCCTCTCCTTCCTGCTGGAGGCTCTGCTCTTCCTCTAGGAACTTCCTGTCTCTCTGCCTT
TGACCTCTCTGTTCCTCTTCTTGCTCTGCGCGCCTCAGTTGTTCCTCCCAGGAGAAGGCA
CTCTGTTCCTGGTGACGCACCTGTTCTTCCCTTTCCTGACGGAGCTGTTCCTCTTCGCGG
AACCTTCTGTCGCGCTCCTGGCGGCCAAGTCGTTGTTCTTCATCCCTTTCCTGACGGAGC
TGTTCCTCTTCGCGGAACCTTCTGTCGCGCTCCTGGCGGCGCAACTGCTCTTCATCCCTT
TCCTGACGGAGCTGTTCCTCTTCGCGGAACTTTCTGTCGCGCTCCTGGCGGCCAAGTCGC
TGTTCATCCCTTTCCTGACGGAGCTGTTCCTCTTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1943747|gb|AAB52418.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1943747|gb|AAB52418.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               507-620, - strand, RNAz p=0.93622

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               507-620, - strand, RNAz p=0.93622

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               195-816, gnl|bosTau2|chr3 (14573033-14572436)
               

               
               195-816, gnl|Hg17|chr1 (148894032-148894587)
               

               
               195-816, gnl|Mm7|chr3 (93548144-93547391)
               


               
               219-815, gnl|bosTau2|chr3 (14574041-14573433)
               

               
               219-815, gnl|Hg17|chr1 (148893135-148893683)
               

               
               219-815, gnl|Mm7|chr3 (93549440-93548634)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               195-816, gnl|bosTau2|chr3 (14573033-14572436)
               

               
               195-816, gnl|Hg17|chr1 (148894032-148894587)
               

               
               195-816, gnl|Mm7|chr3 (93548144-93547391)
               


               
               219-815, gnl|bosTau2|chr3 (14574041-14573433)
               

               
               219-815, gnl|Hg17|chr1 (148893135-148893683)
               

               
               219-815, gnl|Mm7|chr3 (93549440-93548634)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nep (0.919625)
               

               
               cte (0.29274)
               

               
               ton (0.1755)
               

               
               ski (0.146735)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.919625)
               

               
               cte (0.29274)
               

               
               ton (0.1755)
               

               
               ski (0.146735)

	195-816, gnl\|bosTau2\|chr3 (14573033-14572436)
	195-816, gnl\|Hg17\|chr1 (148894032-148894587)
	195-816, gnl\|Mm7\|chr3 (93548144-93547391)

	219-815, gnl\|bosTau2\|chr3 (14574041-14573433)
	219-815, gnl\|Hg17\|chr1 (148893135-148893683)
	219-815, gnl\|Mm7\|chr3 (93549440-93548634)