Non-Coding RNA Search

Ss1.1-Mixc-0025g09.3

Sequence:


               
               GGGCCCAGCCCGCACCAAACCACTTCACCTGAGTTTATGGGAAATTTCAGGCCTTGTCTG
CAGCGCCATTCCAGCTGCCATTGCTTACTTGCTGGCTCACTGAAGCCCAGAATGAGTGTC
CCGTGGTCTTGAATTCTTTGCCCAAAGATGACCAGCATTCAGCCAGCCGAAGGGATGGCC
CAGAGACCTGGCTACCTTCACAGAGCTGCAGCCGTGGAGAGGGGGGCTGCTAGGCTAGGG
GCGGGGGGCAGGAGCCTCTCTCTGGCTGGTGCCTCCCCACCCAGGGGCAGCCTCCTTGTG
CCTGGCCCGCCTGCCCCAAAACCGGAGGAGCCCCAGGGCTTTGGTTTACTATTGGAAAGT
GAAGGCAAGCCTGCAAACAGACTGCCCCTGGAGAGACCCTGGGGGACATTTTCATTCACT
TCAGTTTAAAATACTGACTGCCTGCTGGCAGGTGGGGCCCCACACCGGGAACCGGGAACT
GGGAAGGGAGGCCTCCCCTTTCTGTCCTGGCTTTCCTCCGGCTGTGGGAGGCCATCCGAT
TGCAGGGTGGGGAAGGAATACCAAATGCATTGTTGTTCTGCTTGGTACATCTCACTTGTT
TCTAATAAAGGAAGCAGCTGAACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCAGCCCGCACCAAACCACTTCACCTGAGTTTATGGGAAATTTCAGGCCTTGTCTG
CAGCGCCATTCCAGCTGCCATTGCTTACTTGCTGGCTCACTGAAGCCCAGAATGAGTGTC
CCGTGGTCTTGAATTCTTTGCCCAAAGATGACCAGCATTCAGCCAGCCGAAGGGATGGCC
CAGAGACCTGGCTACCTTCACAGAGCTGCAGCCGTGGAGAGGGGGGCTGCTAGGCTAGGG
GCGGGGGGCAGGAGCCTCTCTCTGGCTGGTGCCTCCCCACCCAGGGGCAGCCTCCTTGTG
CCTGGCCCGCCTGCCCCAAAACCGGAGGAGCCCCAGGGCTTTGGTTTACTATTGGAAAGT
GAAGGCAAGCCTGCAAACAGACTGCCCCTGGAGAGACCCTGGGGGACATTTTCATTCACT
TCAGTTTAAAATACTGACTGCCTGCTGGCAGGTGGGGCCCCACACCGGGAACCGGGAACT
GGGAAGGGAGGCCTCCCCTTTCTGTCCTGGCTTTCCTCCGGCTGTGGGAGGCCATCCGAT
TGCAGGGTGGGGAAGGAATACCAAATGCATTGTTGTTCTGCTTGGTACATCTCACTTGTT
TCTAATAAAGGAAGCAGCTGAACAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               279-393, - strand, RNAz p=0.817832

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-393, - strand, RNAz p=0.817832

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-624, gnl|bosTau2|chr19 (37236451-37235853)
               

               
               19-624, gnl|Hg17|chr17 (40541298-40541907)
               

               
               19-624, gnl|Mm7|chr11 (103177418-103177945)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-624, gnl|bosTau2|chr19 (37236451-37235853)
               

               
               19-624, gnl|Hg17|chr17 (40541298-40541907)
               

               
               19-624, gnl|Mm7|chr11 (103177418-103177945)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cli (0.152812)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	19-624, gnl\|bosTau2\|chr19 (37236451-37235853)
	19-624, gnl\|Hg17\|chr17 (40541298-40541907)
	19-624, gnl\|Mm7\|chr11 (103177418-103177945)

	cli (0.152812)
	cag (0.151194)
	nca (0.136874)
	eep (0.122564)
	jca (0.11396)