Non-Coding RNA Search

Ss1.1-Mixc-0025g14.3

Sequence:


               
               CAACCACTGGGTGGTCAACCCACGGCACAACCTGGGCCTGCAGCTCTCGGTGGAGACACT
GGATGGGCAGAGCATCAACCCCAAGTTGGCGGGCCTGATTGGGCGGCAAGGGCCCCAGAA
CAAGCAGCCCTTCATGGTGGCCTTCTTCAAGGCCACTGAGGTCCACCTCCGCAGCACCCG
CTCCACGGGTGGCAAGCAGCGCAGCCAGAACCGCTCCAAGACGCCCAAGAACCAGGAAGC
CCTGCGGGTGGCCAACGTCGCAGAGAACAGCAGCAGTGACCAGCGGCAGGCCTGTAAGAA
GCATGAGCTCTACGTCAGCTTCCGGGACCTGGGCTGGCAGGACTGGATCATCGCGCCCGA
AGGCTATGCCGCCTACTACTGCGAGGGGGAGTGCGCCTTCCCACTCAACTCGTACATGAA
CGCCACCAACCATGCCATCGTGCAGACGCTGGTCCACTTCATCAACCCTGAGACGGTGCC
CAAGCCTTGCTGCGCCCCGACTCAGCTCAACGCCATTTCCGTCCTCTACTTCGACGACAG
CTCCAACGTCATCCTGAAGAAGTACAGGAACATGGTGGTCCGGGCCTGCGGCTGCCACTA
GCCCTGCCCGAGGCCCGGCCACCCAGGGCCACCGCCGTGGCGAGGAGCCCGCAGACCAAG
GCGGCTGCCTTGCCAGACCGTCTGTCCCCCTCCCCAACCTGAACGGTGCAGGCGTGTGAG
GGTATTTGGGAGGCGAGTGGCTTTTGATCAGTGGTTCGTCGGCGGCGTCCTACGGACGAG
ATCCTACAAGTTGCTGCAGGCGAAACCCAACCGCAGGACATGTAGCTAAAGGAAAGTCGC
CCGGCCACGAGCCCTGGCTGCGAAATCGCGGCCATGCACCGACTCGTCCCAGGGGTAATG
AGGAGCGCCCGTCAGCCAGGCCGCCGGCAGTGGGAGGAAGAGGGTGCGGCTGGGGGTGGG
CACGTTTGTGTCTGTGCGAGAGGAAGACTCATGCGGAGGCTCCTGTAATACATGTCACAA
TAAAACGAATGAATGAAAATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACCACTGGGTGGTCAACCCACGGCACAACCTGGGCCTGCAGCTCTCGGTGGAGACACT
GGATGGGCAGAGCATCAACCCCAAGTTGGCGGGCCTGATTGGGCGGCAAGGGCCCCAGAA
CAAGCAGCCCTTCATGGTGGCCTTCTTCAAGGCCACTGAGGTCCACCTCCGCAGCACCCG
CTCCACGGGTGGCAAGCAGCGCAGCCAGAACCGCTCCAAGACGCCCAAGAACCAGGAAGC
CCTGCGGGTGGCCAACGTCGCAGAGAACAGCAGCAGTGACCAGCGGCAGGCCTGTAAGAA
GCATGAGCTCTACGTCAGCTTCCGGGACCTGGGCTGGCAGGACTGGATCATCGCGCCCGA
AGGCTATGCCGCCTACTACTGCGAGGGGGAGTGCGCCTTCCCACTCAACTCGTACATGAA
CGCCACCAACCATGCCATCGTGCAGACGCTGGTCCACTTCATCAACCCTGAGACGGTGCC
CAAGCCTTGCTGCGCCCCGACTCAGCTCAACGCCATTTCCGTCCTCTACTTCGACGACAG
CTCCAACGTCATCCTGAAGAAGTACAGGAACATGGTGGTCCGGGCCTGCGGCTGCCACTA
GCCCTGCCCGAGGCCCGGCCACCCAGGGCCACCGCCGTGGCGAGGAGCCCGCAGACCAAG
GCGGCTGCCTTGCCAGACCGTCTGTCCCCCTCCCCAACCTGAACGGTGCAGGCGTGTGAG
GGTATTTGGGAGGCGAGTGGCTTTTGATCAGTGGTTCGTCGGCGGCGTCCTACGGACGAG
ATCCTACAAGTTGCTGCAGGCGAAACCCAACCGCAGGACATGTAGCTAAAGGAAAGTCGC
CCGGCCACGAGCCCTGGCTGCGAAATCGCGGCCATGCACCGACTCGTCCCAGGGGTAATG
AGGAGCGCCCGTCAGCCAGGCCGCCGGCAGTGGGAGGAAGAGGGTGCGGCTGGGGGTGGG
CACGTTTGTGTCTGTGCGAGAGGAAGACTCATGCGGAGGCTCCTGTAATACATGTCACAA
TAAAACGAATGAATGAAAATGAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               O88684_RAT

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               O88684_RAT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               65-263, gnl|bosTau2|chr13 (40315915-40316113)
               

               
               65-263, gnl|Hg17|chr20 (55192383-55192185)
               

               
               65-263, gnl|Mm7|chr2 (172623912-172623714)
               


               
               292-607, gnl|bosTau2|chr13 (32142141-32142453)
               

               
               292-607, gnl|Hg17|chr20 (6707430-6707742)
               

               
               292-607, gnl|Mm7|chr2 (133302262-133302574)
               


               
               312-602, gnl|bosTau2|chr11 (61732404-61732694)
               

               
               312-602, gnl|Hg17|chr2 (20792524-20792814)
               

               
               312-602, gnl|Mm7|chr12 (8254142-8253852)
               


               
               629-1041, gnl|bosTau2|chr13 (40325246-40325657)
               

               
               629-1041, gnl|Hg17|chr20 (55179360-55178956)
               

               
               629-1041, gnl|Mm7|chr2 (172614446-172614072)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-263, gnl|bosTau2|chr13 (40315915-40316113)
               

               
               65-263, gnl|Hg17|chr20 (55192383-55192185)
               

               
               65-263, gnl|Mm7|chr2 (172623912-172623714)
               


               
               292-607, gnl|bosTau2|chr13 (32142141-32142453)
               

               
               292-607, gnl|Hg17|chr20 (6707430-6707742)
               

               
               292-607, gnl|Mm7|chr2 (133302262-133302574)
               


               
               312-602, gnl|bosTau2|chr11 (61732404-61732694)
               

               
               312-602, gnl|Hg17|chr2 (20792524-20792814)
               

               
               312-602, gnl|Mm7|chr12 (8254142-8253852)
               


               
               629-1041, gnl|bosTau2|chr13 (40325246-40325657)
               

               
               629-1041, gnl|Hg17|chr20 (55179360-55178956)
               

               
               629-1041, gnl|Mm7|chr2 (172614446-172614072)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	65-263, gnl\|bosTau2\|chr13 (40315915-40316113)
	65-263, gnl\|Hg17\|chr20 (55192383-55192185)
	65-263, gnl\|Mm7\|chr2 (172623912-172623714)

	292-607, gnl\|bosTau2\|chr13 (32142141-32142453)
	292-607, gnl\|Hg17\|chr20 (6707430-6707742)
	292-607, gnl\|Mm7\|chr2 (133302262-133302574)

	312-602, gnl\|bosTau2\|chr11 (61732404-61732694)
	312-602, gnl\|Hg17\|chr2 (20792524-20792814)
	312-602, gnl\|Mm7\|chr12 (8254142-8253852)

	629-1041, gnl\|bosTau2\|chr13 (40325246-40325657)
	629-1041, gnl\|Hg17\|chr20 (55179360-55178956)
	629-1041, gnl\|Mm7\|chr2 (172614446-172614072)