Non-Coding RNA Search

Ss1.1-Mixc-0025g18.3

Sequence:


               
               GTTTGCCATCCGTGGCCATTTGCAAAGACCCAAAGGACTCCTGTCTCGGTTCCCTCTTGC
CCCTGTGAATATCCTCACACGCACGCACGCACACACGTACCTCGTGAGACCCGGGAATCT
GCCCCAGCCCTCCAGTTCCCGAGTCAAACGACGACCACAGACCACATCATGCCACGGTGC
TTGCTCAGGGGAAGGCATGCTCCCTCTGTGGCCTGCTGCCGGGGCCTGGGAGCCCCCCCA
CTGAGCCCACAATGCCACGGAAATCCTTGTTGACCGCCCCCCCCACCCCCGCAAGAGGGG
CCTTCCCAGCTGGGAAGAGCTTGGAGTTGACAGCTGCCTCCTGCCATGTCAAGGTCCCCC
AGAGCCTTGGGGGCTCTGGGGCCTGGGAGGGGGTGGGGGTGGGACTCTCCTTCCCCACCT
TCACCCCCCTCCCTCTTTTCACTGTTGCTTTCTATGTATAGCTCCCTAGACCTTTCACTT
TTTTAAAAACGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGCCATCCGTGGCCATTTGCAAAGACCCAAAGGACTCCTGTCTCGGTTCCCTCTTGC
CCCTGTGAATATCCTCACACGCACGCACGCACACACGTACCTCGTGAGACCCGGGAATCT
GCCCCAGCCCTCCAGTTCCCGAGTCAAACGACGACCACAGACCACATCATGCCACGGTGC
TTGCTCAGGGGAAGGCATGCTCCCTCTGTGGCCTGCTGCCGGGGCCTGGGAGCCCCCCCA
CTGAGCCCACAATGCCACGGAAATCCTTGTTGACCGCCCCCCCCACCCCCGCAAGAGGGG
CCTTCCCAGCTGGGAAGAGCTTGGAGTTGACAGCTGCCTCCTGCCATGTCAAGGTCCCCC
AGAGCCTTGGGGGCTCTGGGGCCTGGGAGGGGGTGGGGGTGGGACTCTCCTTCCCCACCT
TCACCCCCCTCCCTCTTTTCACTGTTGCTTTCTATGTATAGCTCCCTAGACCTTTCACTT
TTTTAAAAACGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-100, - strand, RNAz p=0.568143
               

               
               297-492, + strand, RNAz p=0.999994

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-100, - strand, RNAz p=0.568143
               

               
               297-492, + strand, RNAz p=0.999994

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               404-473, + strand, RNAmicro p=0.939034

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               404-473, + strand, RNAmicro p=0.939034

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               404-360, DG8-247c19 DG8-testis Canis familiaris cDNA 3', mRNA sequence 
(gb|CO602718.1|), blast E-value=0.000000000003, identity=90.62% 
               

               
               421-492, 1258015 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN517451.1|), 
blast E-value=2e-26, identity=97.22% 
               

               
               421-492, 1262891 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN520169.1|), 
blast E-value=2e-26, identity=97.22% 
               

               
               435-361, 181948 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', 
(gb|DY751825.1|), blast E-value=1e-17, identity=93.85% 
               

               
               435-361, 298178 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|EB524088.1|), blast E-value=1e-17, identity=93.85% 
               

               
               435-361, 298688 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|EB524527.1|), blast E-value=1e-17, identity=93.85%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               404-360, DG8-247c19 DG8-testis Canis familiaris cDNA 3', mRNA sequence 
(gb|CO602718.1|), blast E-value=0.000000000003, identity=90.62% 
               

               
               421-492, 1258015 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN517451.1|), 
blast E-value=2e-26, identity=97.22% 
               

               
               421-492, 1262891 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN520169.1|), 
blast E-value=2e-26, identity=97.22% 
               

               
               435-361, 181948 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', 
(gb|DY751825.1|), blast E-value=1e-17, identity=93.85% 
               

               
               435-361, 298178 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|EB524088.1|), blast E-value=1e-17, identity=93.85% 
               

               
               435-361, 298688 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|EB524527.1|), blast E-value=1e-17, identity=93.85%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK131404, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK131404, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-492, gnl|bosTau2|chr7 (6906659-6907163)
               

               
               2-492, gnl|Hg17|chr19 (15394553-15394068)
               

               
               2-492, gnl|Mm7|chr17 (30549555-30549084)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-492, gnl|bosTau2|chr7 (6906659-6907163)
               

               
               2-492, gnl|Hg17|chr19 (15394553-15394068)
               

               
               2-492, gnl|Mm7|chr17 (30549555-30549084)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	2-100, - strand, RNAz p=0.568143
	297-492, + strand, RNAz p=0.999994

	404-360, DG8-247c19 DG8-testis Canis familiaris cDNA 3', mRNA sequence (gb\|CO602718.1\|), blast E-value=0.000000000003, identity=90.62%
	421-492, 1258015 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN517451.1\|), blast E-value=2e-26, identity=97.22%
	421-492, 1262891 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN520169.1\|), blast E-value=2e-26, identity=97.22%
	435-361, 181948 Pigtailed macaque ovary library Macaca nemestrina cDNA 3', (gb\|DY751825.1\|), blast E-value=1e-17, identity=93.85%
	435-361, 298178 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb\|EB524088.1\|), blast E-value=1e-17, identity=93.85%
	435-361, 298688 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb\|EB524527.1\|), blast E-value=1e-17, identity=93.85%

	2-492, gnl\|bosTau2\|chr7 (6906659-6907163)
	2-492, gnl\|Hg17\|chr19 (15394553-15394068)
	2-492, gnl\|Mm7\|chr17 (30549555-30549084)