Non-Coding RNA Search

Ss1.1-Mixc-0025h09.5

Sequence:


               
               ACGTCACCATGTACGAGGACTGCGTGAAGTCCACTGGGGACTATAACCTCTTCTGTGACA
CTGAGGGACCATGGGGCATTGTTCTGGAGTCCCTGGCAGCCATCGGCATAGTGGTTACAG
TGATACTGCTCTTGGCATTTCTCTTCCTCATGCGAAGGGTCCGGGACTGCAGCCAGTGGA
ACGTTCTCCCCACCCAGTTCCTCTTCCTCTTGGGTGTGCTGGGGCTCTTTGGCCTGGCTT
TTGCCTTCATCATCCAGTTCAATGAGCAAACAGCCCCTGTCCGCTACTTTCTCTTTGGGG
TCCTCTTTGCTCTCTGCTTCTCGTGCCTCTTGGCTCACGCCTCCAACCTGGTGAAGCTGG
TCCGGGGCAGAGTCTCCTTCTCTTGGACCACAATTTTGTGCATTGCTATCGGCGTCAGCC
TCTTGCAGACAATCATTGCTATTGAGTACGTGACTCTCATAATGACCAGAGGTATGAGGT
TTGTGCACATGACACCCTGTCAGCTCCACGTGGACTTTGTGGTCCTGCTGGTGTACGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTCACCATGTACGAGGACTGCGTGAAGTCCACTGGGGACTATAACCTCTTCTGTGACA
CTGAGGGACCATGGGGCATTGTTCTGGAGTCCCTGGCAGCCATCGGCATAGTGGTTACAG
TGATACTGCTCTTGGCATTTCTCTTCCTCATGCGAAGGGTCCGGGACTGCAGCCAGTGGA
ACGTTCTCCCCACCCAGTTCCTCTTCCTCTTGGGTGTGCTGGGGCTCTTTGGCCTGGCTT
TTGCCTTCATCATCCAGTTCAATGAGCAAACAGCCCCTGTCCGCTACTTTCTCTTTGGGG
TCCTCTTTGCTCTCTGCTTCTCGTGCCTCTTGGCTCACGCCTCCAACCTGGTGAAGCTGG
TCCGGGGCAGAGTCTCCTTCTCTTGGACCACAATTTTGTGCATTGCTATCGGCGTCAGCC
TCTTGCAGACAATCATTGCTATTGAGTACGTGACTCTCATAATGACCAGAGGTATGAGGT
TTGTGCACATGACACCCTGTCAGCTCCACGTGGACTTTGTGGTCCTGCTGGTGTACGTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61882199|ref|XP_614909.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61882199|ref|XP_614909.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               3-121, - strand, RNAz p=0.919812
               

               
               242-361, - strand, RNAz p=0.646561

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.919812
               

               
               242-361, - strand, RNAz p=0.646561

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               3-540, gnl|bosTau2|chr5 (57643123-57643660)
               

               
               3-540, gnl|canFam2|chr27 (36435408-36434881)
               

               
               3-540, gnl|danRer3|chr12 (33194512-33193958)
               

               
               3-540, gnl|dasNov1|scaffold_7742 (44251-43725)
               

               
               3-540, gnl|echTel1|scaffold_242741 (5475-6002)
               

               
               3-540, gnl|fr1|chrUn (216021114-216020584)
               

               
               3-540, gnl|galGal2|chr1 (44977170-44976640)
               

               
               3-540, gnl|hg17|chr12 (12994026-12994553)
               

               
               3-540, gnl|Hg17|chr12 (12994591-12994054)
               

               
               3-540, gnl|loxAfr1|scaffold_1300 (69030-68503)
               

               
               3-540, gnl|mm7|chr6 (135130670-135131197)
               

               
               3-540, gnl|Mm7|chr6 (135131235-135130698)
               

               
               3-540, gnl|monDom2|scaffold_31 (18370847-18370320)
               

               
               3-540, gnl|oryCun1|scaffold_215410 (8195-8728)
               

               
               3-540, gnl|panTro1|chrUn_random (39248500-39249027)
               

               
               3-540, gnl|rheMac2|chr11 (13321425-13321970)
               

               
               3-540, gnl|rn3|chr4 (172282707-172283234)
               

               
               3-540, gnl|tetNig1|chr3 (10491238-10490699)
               

               
               3-540, gnl|xenTro1|scaffold_156 (901891-902433)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-540, gnl|bosTau2|chr5 (57643123-57643660)
               

               
               3-540, gnl|canFam2|chr27 (36435408-36434881)
               

               
               3-540, gnl|danRer3|chr12 (33194512-33193958)
               

               
               3-540, gnl|dasNov1|scaffold_7742 (44251-43725)
               

               
               3-540, gnl|echTel1|scaffold_242741 (5475-6002)
               

               
               3-540, gnl|fr1|chrUn (216021114-216020584)
               

               
               3-540, gnl|galGal2|chr1 (44977170-44976640)
               

               
               3-540, gnl|hg17|chr12 (12994026-12994553)
               

               
               3-540, gnl|Hg17|chr12 (12994591-12994054)
               

               
               3-540, gnl|loxAfr1|scaffold_1300 (69030-68503)
               

               
               3-540, gnl|mm7|chr6 (135130670-135131197)
               

               
               3-540, gnl|Mm7|chr6 (135131235-135130698)
               

               
               3-540, gnl|monDom2|scaffold_31 (18370847-18370320)
               

               
               3-540, gnl|oryCun1|scaffold_215410 (8195-8728)
               

               
               3-540, gnl|panTro1|chrUn_random (39248500-39249027)
               

               
               3-540, gnl|rheMac2|chr11 (13321425-13321970)
               

               
               3-540, gnl|rn3|chr4 (172282707-172283234)
               

               
               3-540, gnl|tetNig1|chr3 (10491238-10490699)
               

               
               3-540, gnl|xenTro1|scaffold_156 (901891-902433)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nep (0.36785)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)
               

               
               cly (0.120642)

	3-121, - strand, RNAz p=0.919812
	242-361, - strand, RNAz p=0.646561

	3-540, gnl\|bosTau2\|chr5 (57643123-57643660)
	3-540, gnl\|canFam2\|chr27 (36435408-36434881)
	3-540, gnl\|danRer3\|chr12 (33194512-33193958)
	3-540, gnl\|dasNov1\|scaffold_7742 (44251-43725)
	3-540, gnl\|echTel1\|scaffold_242741 (5475-6002)
	3-540, gnl\|fr1\|chrUn (216021114-216020584)
	3-540, gnl\|galGal2\|chr1 (44977170-44976640)
	3-540, gnl\|hg17\|chr12 (12994026-12994553)
	3-540, gnl\|Hg17\|chr12 (12994591-12994054)
	3-540, gnl\|loxAfr1\|scaffold_1300 (69030-68503)
	3-540, gnl\|mm7\|chr6 (135130670-135131197)
	3-540, gnl\|Mm7\|chr6 (135131235-135130698)
	3-540, gnl\|monDom2\|scaffold_31 (18370847-18370320)
	3-540, gnl\|oryCun1\|scaffold_215410 (8195-8728)
	3-540, gnl\|panTro1\|chrUn_random (39248500-39249027)
	3-540, gnl\|rheMac2\|chr11 (13321425-13321970)
	3-540, gnl\|rn3\|chr4 (172282707-172283234)
	3-540, gnl\|tetNig1\|chr3 (10491238-10490699)
	3-540, gnl\|xenTro1\|scaffold_156 (901891-902433)