Non-Coding RNA Search

Ss1.1-Mixc-0025h10.5

Sequence:


               
               GGGATTGGCTGTTGGCGGCGTTGCGGCTAAGCTCGTGTGCGGCAGCAGTGTCGGCAGCGG
CTGCAGGAAAAGGGATCGGCGCGATGTCTCACACCATTTTGCTGGTACAGCCTACCAAGA
GGCCAGAAGGCAGAACTTATGCTGACTATGAATCTGTAAATGAATGCATGGAAGGTGTTT
GTAAAATGTATGAAGAACATCTGAAGAGAATGAATCCCAACAGCCCCTCTATCACATATG
ATATCAGTCAGTTGTTTGATTTTATCGATGATCTGGCAGACCTCAGCTGCCTTGTTTACC
GAGCTGATACCCAGACATACCAGCCTTACAACAAAGACTGGATTAAAGAGAAGATCTACG
TGCTCCTTCGTCGGCAGGCCCAGCAGGCCGGGAAATAGTTGAGTTTGGAAGCGTTGGGGG
GGCGGGGGTGGGCTTGGAACACAGGCGTGTACAGCGTGCTGTAGCGGAAGACTTGTATGA
TAGTAGTCCTGTTTCCATTTGGTACACTCTAGCCAAGGTCGAATGTATTAGATGAAATGT
GAGGGTTTTGTTCAATCTGAAACCCCCATTGCTCCCCCTCCCCCCCCCCTTTTTTTTACT
TAAACATTTTTATGATGCTTTAGACGGAAGTTGGTTTTTGTCAGTTAGCATTGGTTCCAG
TCCTTCAAACTGTTCGTATCTGCTTTATAACATTCACTGTACTAACCCTTCAGATCAGGG
TGGGGGTGGTGGCACAGTTATGTCCTAAAGATGAAGTCTTAGGTGAAAAACAAAAAACAA
ATAAATGTTCTTTAGTTATAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATTGGCTGTTGGCGGCGTTGCGGCTAAGCTCGTGTGCGGCAGCAGTGTCGGCAGCGG
CTGCAGGAAAAGGGATCGGCGCGATGTCTCACACCATTTTGCTGGTACAGCCTACCAAGA
GGCCAGAAGGCAGAACTTATGCTGACTATGAATCTGTAAATGAATGCATGGAAGGTGTTT
GTAAAATGTATGAAGAACATCTGAAGAGAATGAATCCCAACAGCCCCTCTATCACATATG
ATATCAGTCAGTTGTTTGATTTTATCGATGATCTGGCAGACCTCAGCTGCCTTGTTTACC
GAGCTGATACCCAGACATACCAGCCTTACAACAAAGACTGGATTAAAGAGAAGATCTACG
TGCTCCTTCGTCGGCAGGCCCAGCAGGCCGGGAAATAGTTGAGTTTGGAAGCGTTGGGGG
GGCGGGGGTGGGCTTGGAACACAGGCGTGTACAGCGTGCTGTAGCGGAAGACTTGTATGA
TAGTAGTCCTGTTTCCATTTGGTACACTCTAGCCAAGGTCGAATGTATTAGATGAAATGT
GAGGGTTTTGTTCAATCTGAAACCCCCATTGCTCCCCCTCCCCCCCCCCTTTTTTTTACT
TAAACATTTTTATGATGCTTTAGACGGAAGTTGGTTTTTGTCAGTTAGCATTGGTTCCAG
TCCTTCAAACTGTTCGTATCTGCTTTATAACATTCACTGTACTAACCCTTCAGATCAGGG
TGGGGGTGGTGGCACAGTTATGTCCTAAAGATGAAGTCTTAGGTGAAAAACAAAAAACAA
ATAAATGTTCTTTAGTTATAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|6679685|ref|NP_031977.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6679685|ref|NP_031977.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               37-154, + strand, RNAz p=0.577641

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-154, + strand, RNAz p=0.577641

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               37-816, gnl|bosTau2|chr11 (31554493-31553718)
               

               
               37-816, gnl|Hg17|chr7 (138676195-138676961)
               

               
               37-816, gnl|Mm7|chr8 (32875243-32874474)
               


               
               296-800, gnl|bosTau2|chr10 (55691926-55691425)
               

               
               296-800, gnl|Hg17|chr14 (68917110-68916598)
               

               
               296-800, gnl|Mm7|chr12 (78597313-78596819)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-816, gnl|bosTau2|chr11 (31554493-31553718)
               

               
               37-816, gnl|Hg17|chr7 (138676195-138676961)
               

               
               37-816, gnl|Mm7|chr8 (32875243-32874474)
               


               
               296-800, gnl|bosTau2|chr10 (55691926-55691425)
               

               
               296-800, gnl|Hg17|chr14 (68917110-68916598)
               

               
               296-800, gnl|Mm7|chr12 (78597313-78596819)

Expressed library(ies): 36 entry(ies)

More info

Expressed library(ies): 36 entry(ies)

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               fty (0.879198)
               

               
               nep (0.7357)
               

               
               duo (0.691204)
               

               
               ill (0.526778)
               

               
               eye (0.511509)
               

               
               eje (0.395335)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               ebs (0.354904)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.879198)
               

               
               nep (0.7357)
               

               
               duo (0.691204)
               

               
               ill (0.526778)
               

               
               eye (0.511509)
               

               
               eje (0.395335)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               ebs (0.354904)
               

               
               med (0.348756)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	37-816, gnl\|bosTau2\|chr11 (31554493-31553718)
	37-816, gnl\|Hg17\|chr7 (138676195-138676961)
	37-816, gnl\|Mm7\|chr8 (32875243-32874474)

	296-800, gnl\|bosTau2\|chr10 (55691926-55691425)
	296-800, gnl\|Hg17\|chr14 (68917110-68916598)
	296-800, gnl\|Mm7\|chr12 (78597313-78596819)

	fty (0.879198)
	nep (0.7357)
	duo (0.691204)
	ill (0.526778)
	eye (0.511509)
	eje (0.395335)
	elu (0.385356)
	nlu (0.383362)
	ebs (0.354904)
	med (0.348756)
	ecc (0.345105)
	mcp (0.341297)
	cag (0.302389)
	hyp (0.285673)
	nmm (0.265604)
	pgl (0.236967)
	ece (0.229305)
	col (0.195008)
	ton (0.1755)
	fbs (0.175346)
	fhi (0.169578)
	nje (0.16592)
	pty (0.142714)
	cst (0.140036)
	nca (0.136874)
	ssp (0.13552)
	ute (0.132784)
	cov (0.132153)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	cly (0.120642)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)