Ss1.1-Mixc-0025h24.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGCACACTGACAAGAAGCAGATCAGCGTGGGGTTCATCGGCTATCCCAATGTTGGCAA GAGCTCTGTGATAAACACGCTGCGCTCCAAGAAAGTTTGCAACGTGGCCCCCATCGCAGG TGAAACAAAGGTCTGGCAGTATATCACCTTGATGCGGCGGATCTTCCTCATCGACTGTCC GGGTGTGGTCTACCCCTCCGAGGACTCAGAGACGGACATCGTGCTGAAAGGAGTCGTTCA AGTTGAAAAAATTAAGACTCCTGAAGACCACATTGGTGCTGTACTTGAACGAGCAAAGCC AGAATATATCAGCAAGACGTACAAGATCGATTCTTGGGAGAATGCTGAGGACTTTCTTGA GAAGCTGGCTTTCCGGACAGGGAAGTTATTAAAGGGTGGAGAGCCCGACCTGCGGACCGT GGGGAAGATGGTCCTCAATGACTGGCAGAGGGGCCGGATTCCTTTCTTTGTCAAGCCGCC CAATGCTGAGCCCCCGGCCACCCCCCAGCTTCCGTCCGCCTCGACTTTGGAAGTTGCCCC AGAAACAGCCCAGAACAACACAGAAGAGGAAGCCCCAGAATCTGGAGGTGGAGGGTCAGA ACCCGGCCTTGAGAAGAAGGAAGAGGAGCCTGGCCAGTGCGGCGCTGACGCAGAAATGCA ACAGATCCTTGCGCGGGTCCGGCAGAACTTCGGCAAGATCAATGTCGTGCCTCAGTTTTC GGGGGACGACCTGGTTCCCCTGGAGATGTCCGATATCGAGGAAGAGCTGGAGAGCCTCTC TGGGGAGAGGGAGGAGGAGGAGGAACAGGAGCCCCAAGAAGACACTGACGAAGAGCCTTT CACAGAAGCCCAGGAAGAACACACGGGGAGCAGCACCAAGGCCGTCATTCAAGCCCTGGA TGAGAAGATTGCCAAGTACCAGAGGTTTTTAGACAAAGCCAAAGCGAAGAAGTTCTCGGC GGTCAGAATATCCAAGGGACTGAGTGAGAAGGTTTTTGCAAAACCTGAGCAACAAAAAGC AGTTGAAGAAGATGTAGAAGATACAGCACCTACCAAAAAGGGAAAGAAGAGGAAGGCACA GAGGGAAGAAGAGCATTCAGACAAAACTCGCAGGATGCTTACATCTAAGGAACGGAGACG AGCAGCACGGCAGCAGCAACCCAGAAAAGTCGGTGTACGCTACTATGAAACTCACAACGT GAAAAACAGGAACAGGAACAAAAAGAAGACCAGTGACTCAGAGGGGCAGAAACAGAGACG CAAAAAATTCAAACATAAGCAGTAACATTTTAAAAGTTGTTTATTAAATTATACAAAAAT ATGCAAAAAAAATGAGAAGGTTTTTGCAAAACCTGAGCAACAAAAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGCACACTGACAAGAAGCAGATCAGCGTGGGGTTCATCGGCTATCCCAATGTTGGCAA GAGCTCTGTGATAAACACGCTGCGCTCCAAGAAAGTTTGCAACGTGGCCCCCATCGCAGG TGAAACAAAGGTCTGGCAGTATATCACCTTGATGCGGCGGATCTTCCTCATCGACTGTCC GGGTGTGGTCTACCCCTCCGAGGACTCAGAGACGGACATCGTGCTGAAAGGAGTCGTTCA AGTTGAAAAAATTAAGACTCCTGAAGACCACATTGGTGCTGTACTTGAACGAGCAAAGCC AGAATATATCAGCAAGACGTACAAGATCGATTCTTGGGAGAATGCTGAGGACTTTCTTGA GAAGCTGGCTTTCCGGACAGGGAAGTTATTAAAGGGTGGAGAGCCCGACCTGCGGACCGT GGGGAAGATGGTCCTCAATGACTGGCAGAGGGGCCGGATTCCTTTCTTTGTCAAGCCGCC CAATGCTGAGCCCCCGGCCACCCCCCAGCTTCCGTCCGCCTCGACTTTGGAAGTTGCCCC AGAAACAGCCCAGAACAACACAGAAGAGGAAGCCCCAGAATCTGGAGGTGGAGGGTCAGA ACCCGGCCTTGAGAAGAAGGAAGAGGAGCCTGGCCAGTGCGGCGCTGACGCAGAAATGCA ACAGATCCTTGCGCGGGTCCGGCAGAACTTCGGCAAGATCAATGTCGTGCCTCAGTTTTC GGGGGACGACCTGGTTCCCCTGGAGATGTCCGATATCGAGGAAGAGCTGGAGAGCCTCTC TGGGGAGAGGGAGGAGGAGGAGGAACAGGAGCCCCAAGAAGACACTGACGAAGAGCCTTT CACAGAAGCCCAGGAAGAACACACGGGGAGCAGCACCAAGGCCGTCATTCAAGCCCTGGA TGAGAAGATTGCCAAGTACCAGAGGTTTTTAGACAAAGCCAAAGCGAAGAAGTTCTCGGC GGTCAGAATATCCAAGGGACTGAGTGAGAAGGTTTTTGCAAAACCTGAGCAACAAAAAGC AGTTGAAGAAGATGTAGAAGATACAGCACCTACCAAAAAGGGAAAGAAGAGGAAGGCACA GAGGGAAGAAGAGCATTCAGACAAAACTCGCAGGATGCTTACATCTAAGGAACGGAGACG AGCAGCACGGCAGCAGCAACCCAGAAAAGTCGGTGTACGCTACTATGAAACTCACAACGT GAAAAACAGGAACAGGAACAAAAAGAAGACCAGTGACTCAGAGGGGCAGAAACAGAGACG CAAAAAATTCAAACATAAGCAGTAACATTTTAAAAGTTGTTTATTAAATTATACAAAAAT ATGCAAAAAAAATGAGAAGGTTTTTGCAAAACCTGAGCAACAAAAAGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr3 (75733316-75733447) | |
| 1-132, gnl|canFam2|chr15 (7917201-7917090) | |
| 1-132, gnl|canFam2|chr15 (7917179-7917054) | |
| 1-132, gnl|danRer3|chr16 (46175409-46175506) | |
| 1-132, gnl|danRer3|chr16 (46175418-46175539) | |
| 1-132, gnl|dasNov1|scaffold_60930 (895-989) | |
| 1-132, gnl|dasNov1|scaffold_60930 (900-1025) | |
| 1-132, gnl|echTel1|scaffold_54031 (5050-4939) | |
| 1-132, gnl|echTel1|scaffold_54031 (5026-4903) | |
| 1-132, gnl|fr1|chrUn (99464970-99465071) | |
| 1-132, gnl|fr1|chrUn (99464974-99465114) | |
| 1-132, gnl|galGal2|chr23 (3294033-3293933) | |
| 1-132, gnl|hg17|chr1 (37711104-37711215) | |
| 1-132, gnl|Hg17|chr1 (37711251-37711120) | |
| 1-132, gnl|hg17|chr7 (49760256-49760381) | |
| 1-132, gnl|loxAfr1|scaffold_8071 (48813-48702) | |
| 1-132, gnl|loxAfr1|scaffold_8071 (48789-48666) | |
| 1-132, gnl|mm7|chr4 (124491032-124490930) | |
| 1-132, gnl|mm7|chr4 (124491019-124490894) | |
| 1-132, gnl|Mm7|chr4 (124490892-124491023) | |
| 1-132, gnl|monDom2|scaffold_43 (12082290-12082179) | |
| 1-132, gnl|monDom2|scaffold_43 (12082266-12082143) | |
| 1-132, gnl|oryCun1|scaffold_201047 (88927-89036) | |
| 1-132, gnl|oryCun1|scaffold_201047 (88947-89072) | |
| 1-132, gnl|panTro1|chr1 (38552544-38552655) | |
| 1-132, gnl|panTro1|chr6 (51358150-51358275) | |
| 1-132, gnl|rheMac2|chr3 (76451358-76451267) | |
| 1-132, gnl|rheMac2|chr3 (76451358-76451231) | |
| 1-132, gnl|rn3|chr5 (144400464-144400362) | |
| 1-132, gnl|rn3|chr5 (144400451-144400326) | |
| 1-132, gnl|tetNig1|chrUn_random (30692159-30692064) | |
| 1-132, gnl|tetNig1|chrUn_random (30692153-30692016) | |
| 1-132, gnl|xenTro1|scaffold_619 (292042-291931) | |
| 236-395, gnl|bosTau2|chr3 (75735073-75735232) | |
| 236-395, gnl|canFam2|chr15 (7918975-7918747) | |
| 236-395, gnl|canFam2|chr15 (7918924-7918768) | |
| 236-395, gnl|danRer3|chr16 (46170584-46170812) | |
| 236-395, gnl|danRer3|chr16 (46170648-46170804) | |
| 236-395, gnl|dasNov1|scaffold_135850 (847-599) | |
| 236-395, gnl|dasNov1|scaffold_60930 (629-785) | |
| 236-395, gnl|echTel1|scaffold_177522 (817-617) | |
| 236-395, gnl|echTel1|scaffold_177522 (794-638) | |
| 236-395, gnl|fr1|chrUn (99461005-99461222) | |
| 236-395, gnl|fr1|chrUn (99461045-99461201) | |
| 236-395, gnl|galGal2|chr23 (3294826-3294608) | |
| 236-395, gnl|hg17|chr1 (37709307-37709536) | |
| 236-395, gnl|Hg17|chr1 (37709517-37709358) | |
| 236-395, gnl|hg17|chr7 (49759996-49760152) | |
| 236-395, gnl|loxAfr1|scaffold_8071 (50668-50419) | |
| 236-395, gnl|loxAfr1|scaffold_8071 (50596-50441) | |
| 236-395, gnl|mm7|chr4 (124493200-124492978) | |
| 236-395, gnl|mm7|chr4 (124493154-124492998) | |
| 236-395, gnl|Mm7|chr4 (124492994-124493153) | |
| 236-395, gnl|monDom2|scaffold_43 (12084745-12084533) | |
| 236-395, gnl|monDom2|scaffold_43 (12084710-12084554) | |
| 236-395, gnl|oryCun1|scaffold_201047 (87288-87520) | |
| 236-395, gnl|oryCun1|scaffold_201047 (87343-87498) | |
| 236-395, gnl|panTro1|chr1 (38550748-38550977) | |
| 236-395, gnl|panTro1|chr6 (51357889-51358046) | |
| 236-395, gnl|rheMac2|chr1 (40438663-40438892) | |
| 236-395, gnl|rheMac2|chr3 (76451619-76451466) | |
| 236-395, gnl|rn3|chr5 (144402696-144402472) | |
| 236-395, gnl|rn3|chr5 (144402649-144402493) | |
| 236-395, gnl|tetNig1|chrUn_random (30693735-30693508) | |
| 236-395, gnl|tetNig1|chrUn_random (30693670-30693514) | |
| 236-395, gnl|xenTro1|scaffold_619 (293797-293567) | |
| 507-966, gnl|bosTau2|chr3 (75738469-75738928) | |
| 507-966, gnl|Hg17|chr1 (37703998-37703545) | |
| 507-966, gnl|Mm7|chr4 (124497049-124497502) | |
| 1134-1326, gnl|bosTau2|chr3 (75741098-75741290) | |
| 1134-1326, gnl|Hg17|chr1 (37701700-37701509) | |
| 1134-1326, gnl|Mm7|chr4 (124499832-124500024) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr3 (75733316-75733447) | |
| 1-132, gnl|canFam2|chr15 (7917201-7917090) | |
| 1-132, gnl|canFam2|chr15 (7917179-7917054) | |
| 1-132, gnl|danRer3|chr16 (46175409-46175506) | |
| 1-132, gnl|danRer3|chr16 (46175418-46175539) | |
| 1-132, gnl|dasNov1|scaffold_60930 (895-989) | |
| 1-132, gnl|dasNov1|scaffold_60930 (900-1025) | |
| 1-132, gnl|echTel1|scaffold_54031 (5050-4939) | |
| 1-132, gnl|echTel1|scaffold_54031 (5026-4903) | |
| 1-132, gnl|fr1|chrUn (99464970-99465071) | |
| 1-132, gnl|fr1|chrUn (99464974-99465114) | |
| 1-132, gnl|galGal2|chr23 (3294033-3293933) | |
| 1-132, gnl|hg17|chr1 (37711104-37711215) | |
| 1-132, gnl|Hg17|chr1 (37711251-37711120) | |
| 1-132, gnl|hg17|chr7 (49760256-49760381) | |
| 1-132, gnl|loxAfr1|scaffold_8071 (48813-48702) | |
| 1-132, gnl|loxAfr1|scaffold_8071 (48789-48666) | |
| 1-132, gnl|mm7|chr4 (124491032-124490930) | |
| 1-132, gnl|mm7|chr4 (124491019-124490894) | |
| 1-132, gnl|Mm7|chr4 (124490892-124491023) | |
| 1-132, gnl|monDom2|scaffold_43 (12082290-12082179) | |
| 1-132, gnl|monDom2|scaffold_43 (12082266-12082143) | |
| 1-132, gnl|oryCun1|scaffold_201047 (88927-89036) | |
| 1-132, gnl|oryCun1|scaffold_201047 (88947-89072) | |
| 1-132, gnl|panTro1|chr1 (38552544-38552655) | |
| 1-132, gnl|panTro1|chr6 (51358150-51358275) | |
| 1-132, gnl|rheMac2|chr3 (76451358-76451267) | |
| 1-132, gnl|rheMac2|chr3 (76451358-76451231) | |
| 1-132, gnl|rn3|chr5 (144400464-144400362) | |
| 1-132, gnl|rn3|chr5 (144400451-144400326) | |
| 1-132, gnl|tetNig1|chrUn_random (30692159-30692064) | |
| 1-132, gnl|tetNig1|chrUn_random (30692153-30692016) | |
| 1-132, gnl|xenTro1|scaffold_619 (292042-291931) | |
| 236-395, gnl|bosTau2|chr3 (75735073-75735232) | |
| 236-395, gnl|canFam2|chr15 (7918975-7918747) | |
| 236-395, gnl|canFam2|chr15 (7918924-7918768) | |
| 236-395, gnl|danRer3|chr16 (46170584-46170812) | |
| 236-395, gnl|danRer3|chr16 (46170648-46170804) | |
| 236-395, gnl|dasNov1|scaffold_135850 (847-599) | |
| 236-395, gnl|dasNov1|scaffold_60930 (629-785) | |
| 236-395, gnl|echTel1|scaffold_177522 (817-617) | |
| 236-395, gnl|echTel1|scaffold_177522 (794-638) | |
| 236-395, gnl|fr1|chrUn (99461005-99461222) | |
| 236-395, gnl|fr1|chrUn (99461045-99461201) | |
| 236-395, gnl|galGal2|chr23 (3294826-3294608) | |
| 236-395, gnl|hg17|chr1 (37709307-37709536) | |
| 236-395, gnl|Hg17|chr1 (37709517-37709358) | |
| 236-395, gnl|hg17|chr7 (49759996-49760152) | |
| 236-395, gnl|loxAfr1|scaffold_8071 (50668-50419) | |
| 236-395, gnl|loxAfr1|scaffold_8071 (50596-50441) | |
| 236-395, gnl|mm7|chr4 (124493200-124492978) | |
| 236-395, gnl|mm7|chr4 (124493154-124492998) | |
| 236-395, gnl|Mm7|chr4 (124492994-124493153) | |
| 236-395, gnl|monDom2|scaffold_43 (12084745-12084533) | |
| 236-395, gnl|monDom2|scaffold_43 (12084710-12084554) | |
| 236-395, gnl|oryCun1|scaffold_201047 (87288-87520) | |
| 236-395, gnl|oryCun1|scaffold_201047 (87343-87498) | |
| 236-395, gnl|panTro1|chr1 (38550748-38550977) | |
| 236-395, gnl|panTro1|chr6 (51357889-51358046) | |
| 236-395, gnl|rheMac2|chr1 (40438663-40438892) | |
| 236-395, gnl|rheMac2|chr3 (76451619-76451466) | |
| 236-395, gnl|rn3|chr5 (144402696-144402472) | |
| 236-395, gnl|rn3|chr5 (144402649-144402493) | |
| 236-395, gnl|tetNig1|chrUn_random (30693735-30693508) | |
| 236-395, gnl|tetNig1|chrUn_random (30693670-30693514) | |
| 236-395, gnl|xenTro1|scaffold_619 (293797-293567) | |
| 507-966, gnl|bosTau2|chr3 (75738469-75738928) | |
| 507-966, gnl|Hg17|chr1 (37703998-37703545) | |
| 507-966, gnl|Mm7|chr4 (124497049-124497502) | |
| 1134-1326, gnl|bosTau2|chr3 (75741098-75741290) | |
| 1134-1326, gnl|Hg17|chr1 (37701700-37701509) | |
| 1134-1326, gnl|Mm7|chr4 (124499832-124500024) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| cte (0.87822) | |
| sto (0.719295) | |
| che (0.545256) | |
| cki (0.495704) | |
| cmu (0.372787) | |
| fbs (0.350693) | |
| eye (0.341006) | |
| cut (0.339847) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.87822) | |
| sto (0.719295) | |
| che (0.545256) | |
| cki (0.495704) | |
| cmu (0.372787) | |
| fbs (0.350693) | |
| eye (0.341006) | |
| cut (0.339847) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| fco (0.157208) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ecc (0.115035) |