Non-Coding RNA Search

Ss1.1-Mixc-0025j17.3

Sequence:


               
               GGGTTCTAACTCTGCCTTGCACCCAAAGCAGAATTGAGCTGGATAGAAAAAGGTGTCCAT
GGGGCGGCGGGGGGGGGGGGGGTCCTCTCTTCTACAGCACACCTCGGTCTCAGCGTCAAC
GGATGCATTTTCCTGGCTTATGGGTGGGGGACGAAACACACCCACACACGGATGAATCAG
ACCAACAGCTTTATTGGAAAATCAAAGCAAAGCCCCTCTGCTCCTGCGGTTCCGGTAGCG
TCGGCGTCAGGCTCTGAGCATCCATAAGTCCTGTGGGTAGAAGACAAGGCGTGGAATCAG
AACTTAAGGAGTCCAGAGTACGCGAGAGGCCGCAGCCGAGCCCGGAGCGGCGGCGCGTGT
CGGGGCCTGGGTTTCACCTCCCCACACCGAGAGTGAGCGGTGAGCTAAGGCTCCTGGTGG
CTCTAGGCGCCGAATCTCACCCACGGCCATGGCCAAAGCCGCAGGTGATTTTCAAACGAC
GCCGACCTCCTCAACGGCCCCCCCCCCCAAACCCCGCCCGGGATAGAAAGTGCTAAAATG
CCGGAAAGCCAGCCGGGGAGACCTACCTGGAAGCCGAAAGAACAAGATAGTCGCAGCGCG
GGCCTTTATAGCAGCGCCGCAGTAGTGCAGATTCCCGGGCCGAGAACCTGCAAACACGCC
TGCGCTCGCAGAGCTCGGTGGGGGCGGGGCCCCGCGCAGCCAATCACAGGCTGCTTTATA
GGCCCTCGGCGCACGTCGGCCTGAGGCGGGGCAACCCAGGTCTCGCGGCGCTTGGCGACA
TATAAAAGCTCCCTCGGGCGAGCACGTCTTTCTTCTTCGTGAAAACACGTGAGTGGGTTC
TCCCGCTGGGGCGGCCGAGGCGCCTAGGCGGCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTCTAACTCTGCCTTGCACCCAAAGCAGAATTGAGCTGGATAGAAAAAGGTGTCCAT
GGGGCGGCGGGGGGGGGGGGGGTCCTCTCTTCTACAGCACACCTCGGTCTCAGCGTCAAC
GGATGCATTTTCCTGGCTTATGGGTGGGGGACGAAACACACCCACACACGGATGAATCAG
ACCAACAGCTTTATTGGAAAATCAAAGCAAAGCCCCTCTGCTCCTGCGGTTCCGGTAGCG
TCGGCGTCAGGCTCTGAGCATCCATAAGTCCTGTGGGTAGAAGACAAGGCGTGGAATCAG
AACTTAAGGAGTCCAGAGTACGCGAGAGGCCGCAGCCGAGCCCGGAGCGGCGGCGCGTGT
CGGGGCCTGGGTTTCACCTCCCCACACCGAGAGTGAGCGGTGAGCTAAGGCTCCTGGTGG
CTCTAGGCGCCGAATCTCACCCACGGCCATGGCCAAAGCCGCAGGTGATTTTCAAACGAC
GCCGACCTCCTCAACGGCCCCCCCCCCCAAACCCCGCCCGGGATAGAAAGTGCTAAAATG
CCGGAAAGCCAGCCGGGGAGACCTACCTGGAAGCCGAAAGAACAAGATAGTCGCAGCGCG
GGCCTTTATAGCAGCGCCGCAGTAGTGCAGATTCCCGGGCCGAGAACCTGCAAACACGCC
TGCGCTCGCAGAGCTCGGTGGGGGCGGGGCCCCGCGCAGCCAATCACAGGCTGCTTTATA
GGCCCTCGGCGCACGTCGGCCTGAGGCGGGGCAACCCAGGTCTCGCGGCGCTTGGCGACA
TATAAAAGCTCCCTCGGGCGAGCACGTCTTTCTTCTTCGTGAAAACACGTGAGTGGGTTC
TCCCGCTGGGGCGGCCGAGGCGCCTAGGCGGCCAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               371-512, - strand, RNAz p=0.956704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-512, - strand, RNAz p=0.956704

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               156-874, gnl|bosTau2|chr25 (3078584-3079280)
               

               
               156-874, gnl|Hg17|chr16 (1955511-1954751)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               156-874, gnl|bosTau2|chr25 (3078584-3079280)
               

               
               156-874, gnl|Hg17|chr16 (1955511-1954751)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	156-874, gnl\|bosTau2\|chr25 (3078584-3079280)
	156-874, gnl\|Hg17\|chr16 (1955511-1954751)