Ss1.1-Mixc-0025m10.5
|
CACAAAGGAATGTCCCAAATGCCATGTCACAATTGAGAAGGATGGCGGTTGTAATCACAT
GGTCTGTCGTAACCAGAACTGTAAAGCAGAGTTTTGCTGGGTGTGTCTTGGCCCTTGGGA
ACCACATGGATCTGCCTGGTACAACTGTAACCGCTATAATGAGGATGATGCAAAGGCAGC
AAGAGACGCACAAGAGCGATCAAGGGCAGCCCTGCAGAGGTACCTGTTCTACTGTAATCG
CTATATGAACCACATGCAGAGTCTACGCTTTGAGCACAAACTCTATGCTCAGGTGAAGCA
GAAAATGGAGGAGATGCAGCAGCACAACATGTCCTGGATTGAGGTGCAGTTCCTGAAGAA
AGCAGTTGATGTCCTCTGCCAGTGTCGTGCCACACTCATGTACACTTATGTCTTCGCTTT
CTACCTCAAAAAGAATAACCAGTCCATTATCTTTGAGAATAACCAAGCAGATCTAGAGAA
TGCCACAGAGGTGCTCTCGGGCTACCTTGAACGAGATATTTCCCAAGACTCTCTGCAGGA
TATAAAGCAGAAAGTACAAGATAAGTACAGATACTGTGAGAGTCGACGAAGGGTTTTGTT
ACAGCATGTGCATGAAGGCTATGAAAAAGATCTGTGGGAGTACATTGAGGACTGAGAAAT
GGCCCTGCATAAAATGAACTCTGAAAACTTTACCATCTAGAGTGCTCATGCAATTAAAAC
AAACAAAACAAAGCAAACACAAACAAGGAGGCACTAAGCCTATTCTGACACCGCTGGTCT
GTAGTACCAGAATTCTGTTTTGTTAACGGAAAGTTAAAGTAAATTATATTGTAATAATAA
AAAAAAGGTAGATAAACCATTGTACAACAGTATTCTAGGCCGCCAACAAAAGTGTGACAG
ACACACTAAAAGCCCTCCAACTTTAACTTGTAACGTAGCTTCATTCTCAAAGCTGACTCT
TCTTTTTCTTTTTCTTTTTCCTGAGTGTAGTACAGTTAAAATTTAAAACAGCTCCTTGAC
ACTGCTTTTCATGTCCAAACCAGCCATTTTGTTGTACTTTGGTAAAGGACCTCTTCCCCT
TCCTCCCTACACATACAAATACACCCACACACACAGACTGTCTCTCTCTCATACCCCAGG
GTCATGAGTGAATGATGATTAGTTCCTTGTAAAGAAAATTCTTGGGTTGGGGAAGAGGGT
AGACAGAAAGAGGAATTAAACAAACAAAAAAAAACCACAAAAAAACTTTGTATATGACTT
TTAAAACAAGAGGACAACACAGTATTTTTCAAAATTGTATATAGCGCATATGCATGGACA
AAGCAAGCGTGGCACGTGTTTGCATAATGTTTAATTACAAAAATATTTATTCTTTAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CACAAAGGAATGTCCCAAATGCCATGTCACAATTGAGAAGGATGGCGGTTGTAATCACAT
GGTCTGTCGTAACCAGAACTGTAAAGCAGAGTTTTGCTGGGTGTGTCTTGGCCCTTGGGA
ACCACATGGATCTGCCTGGTACAACTGTAACCGCTATAATGAGGATGATGCAAAGGCAGC
AAGAGACGCACAAGAGCGATCAAGGGCAGCCCTGCAGAGGTACCTGTTCTACTGTAATCG
CTATATGAACCACATGCAGAGTCTACGCTTTGAGCACAAACTCTATGCTCAGGTGAAGCA
GAAAATGGAGGAGATGCAGCAGCACAACATGTCCTGGATTGAGGTGCAGTTCCTGAAGAA
AGCAGTTGATGTCCTCTGCCAGTGTCGTGCCACACTCATGTACACTTATGTCTTCGCTTT
CTACCTCAAAAAGAATAACCAGTCCATTATCTTTGAGAATAACCAAGCAGATCTAGAGAA
TGCCACAGAGGTGCTCTCGGGCTACCTTGAACGAGATATTTCCCAAGACTCTCTGCAGGA
TATAAAGCAGAAAGTACAAGATAAGTACAGATACTGTGAGAGTCGACGAAGGGTTTTGTT
ACAGCATGTGCATGAAGGCTATGAAAAAGATCTGTGGGAGTACATTGAGGACTGAGAAAT
GGCCCTGCATAAAATGAACTCTGAAAACTTTACCATCTAGAGTGCTCATGCAATTAAAAC
AAACAAAACAAAGCAAACACAAACAAGGAGGCACTAAGCCTATTCTGACACCGCTGGTCT
GTAGTACCAGAATTCTGTTTTGTTAACGGAAAGTTAAAGTAAATTATATTGTAATAATAA
AAAAAAGGTAGATAAACCATTGTACAACAGTATTCTAGGCCGCCAACAAAAGTGTGACAG
ACACACTAAAAGCCCTCCAACTTTAACTTGTAACGTAGCTTCATTCTCAAAGCTGACTCT
TCTTTTTCTTTTTCTTTTTCCTGAGTGTAGTACAGTTAAAATTTAAAACAGCTCCTTGAC
ACTGCTTTTCATGTCCAAACCAGCCATTTTGTTGTACTTTGGTAAAGGACCTCTTCCCCT
TCCTCCCTACACATACAAATACACCCACACACACAGACTGTCTCTCTCTCATACCCCAGG
GTCATGAGTGAATGATGATTAGTTCCTTGTAAAGAAAATTCTTGGGTTGGGGAAGAGGGT
AGACAGAAAGAGGAATTAAACAAACAAAAAAAAACCACAAAAAAACTTTGTATATGACTT
TTAAAACAAGAGGACAACACAGTATTTTTCAAAATTGTATATAGCGCATATGCATGGACA
AAGCAAGCGTGGCACGTGTTTGCATAATGTTTAATTACAAAAATATTTATTCTTTAAAAA |
|
gi|11990424|dbj|BAB19786.1| |
Protein identifier
|
gi|11990424|dbj|BAB19786.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-141, gnl|bosTau2|chr10 (10923559-10923697) |
|
3-141, gnl|Hg17|chr15 (70649567-70649705) |
|
3-141, gnl|Mm7|chr9 (59432787-59432649) |
| |
|
195-457, gnl|bosTau2|chr10 (10932516-10932778) |
|
195-457, gnl|canFam2|chr30 (39032336-39032619) |
|
195-457, gnl|danRer3|chr18 (20250218-20249953) |
|
195-457, gnl|fr1|chrUn (68035940-68035671) |
|
195-457, gnl|galGal2|chr10 (996935-996654) |
|
195-457, gnl|hg17|chr15 (70660123-70660405) |
|
195-457, gnl|Hg17|chr15 (70660124-70660386) |
|
195-457, gnl|mm7|chr9 (59423543-59423257) |
|
195-457, gnl|Mm7|chr9 (59423540-59423278) |
|
195-457, gnl|monDom2|scaffold_41 (6624117-6623848) |
|
195-457, gnl|oryCun1|scaffold_143756 (15315-15036) |
|
195-457, gnl|panTro1|chr16 (71307011-71307293) |
|
195-457, gnl|rn3|chr8 (63227641-63227358) |
|
195-457, gnl|tetNig1|chr13 (7456772-7457041) |
|
195-457, gnl|xenTro1|scaffold_62 (509893-509624) |
| |
|
566-1380, gnl|bosTau2|chr10 (10934901-10935703) |
|
566-1380, gnl|Hg17|chr15 (70662598-70663392) |
|
566-1380, gnl|Mm7|chr9 (59420310-59419530) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-141, gnl|bosTau2|chr10 (10923559-10923697) |
|
3-141, gnl|Hg17|chr15 (70649567-70649705) |
|
3-141, gnl|Mm7|chr9 (59432787-59432649) |
| |
|
195-457, gnl|bosTau2|chr10 (10932516-10932778) |
|
195-457, gnl|canFam2|chr30 (39032336-39032619) |
|
195-457, gnl|danRer3|chr18 (20250218-20249953) |
|
195-457, gnl|fr1|chrUn (68035940-68035671) |
|
195-457, gnl|galGal2|chr10 (996935-996654) |
|
195-457, gnl|hg17|chr15 (70660123-70660405) |
|
195-457, gnl|Hg17|chr15 (70660124-70660386) |
|
195-457, gnl|mm7|chr9 (59423543-59423257) |
|
195-457, gnl|Mm7|chr9 (59423540-59423278) |
|
195-457, gnl|monDom2|scaffold_41 (6624117-6623848) |
|
195-457, gnl|oryCun1|scaffold_143756 (15315-15036) |
|
195-457, gnl|panTro1|chr16 (71307011-71307293) |
|
195-457, gnl|rn3|chr8 (63227641-63227358) |
|
195-457, gnl|tetNig1|chr13 (7456772-7457041) |
|
195-457, gnl|xenTro1|scaffold_62 (509893-509624) |
| |
|
566-1380, gnl|bosTau2|chr10 (10934901-10935703) |
|
566-1380, gnl|Hg17|chr15 (70662598-70663392) |
|
566-1380, gnl|Mm7|chr9 (59420310-59419530) |
|
cte (0.87822) |
|
ste (0.270416) |
|
hea (0.204499) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
isp (0.150376) |
|
fat (0.147427) |
|
ski (0.146735) |
|
ova (0.129132) |
|
ret (0.128733) |
|
thg (0.126791) |
|
bla (0.124347) |
|
tra (0.123092) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
spc (0.113366) |
|
cty (0.10408) |
|
cte (0.87822) |
|
ste (0.270416) |
|
hea (0.204499) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
isp (0.150376) |
|
fat (0.147427) |
|
ski (0.146735) |
|
ova (0.129132) |
|
ret (0.128733) |
|
thg (0.126791) |
|
bla (0.124347) |
|
tra (0.123092) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
spc (0.113366) |
|
cty (0.10408) |
