Non-Coding RNA Search

Ss1.1-Mixc-0025n22.5

Sequence:


               
               TTATTGAAGATGTGCAGGAGGAACTGAGCAGCAGATTGCCCTGTGCTGTGGAAGAGCACA
TAATAGGTGAGGCTTCTATACTAGCTACCTTCTCCATAACAGAAGGGAAGAAGAAGATTC
CTGTTGCTGGCTGCAGAGTCCAAAAGGGACAGTTGGAAAAGCAAAAAAAATTTAAATTAA
TCCGTAATGGGCATGTCATTTGGAAGGGCTCATTGATCTCACTGAAACACCATAAAGATG
ATATTTCTGTCATCAAAACTGGAATGGATTGTGGTCTCAGTTTGGATGAAGAAAAGATAG
AATTTAAAGTGGGAGATGGTATTGTTTGTTATGAAGAAAAAGAAGTTCCAGCCAAGACTT
CTTGGGATCCAGGATTTTAAAATTGTATTGAAAGTACAAATGAGTTCCTGTCATGGCTCA
GTGGTAACGAATCTAACTAGTATCCATGGGGACATGGGTTTTATCCCTGCTTTTGCTCAG
TGGGTTGGGGATCTGGCATTGCCATGAGCTGTGGTGTATGTTGCAGATGTGGCTCAGATC
CCATGTTGCTGTGGCATAGCTGCAGCTCCAATTTAACTCCTAGCCTGGGAAATTCCATGT
GTTGTGGGTGTGGCCCTAAAAAAAAATAAAAGAAAAAAAAGTGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTGAAGATGTGCAGGAGGAACTGAGCAGCAGATTGCCCTGTGCTGTGGAAGAGCACA
TAATAGGTGAGGCTTCTATACTAGCTACCTTCTCCATAACAGAAGGGAAGAAGAAGATTC
CTGTTGCTGGCTGCAGAGTCCAAAAGGGACAGTTGGAAAAGCAAAAAAAATTTAAATTAA
TCCGTAATGGGCATGTCATTTGGAAGGGCTCATTGATCTCACTGAAACACCATAAAGATG
ATATTTCTGTCATCAAAACTGGAATGGATTGTGGTCTCAGTTTGGATGAAGAAAAGATAG
AATTTAAAGTGGGAGATGGTATTGTTTGTTATGAAGAAAAAGAAGTTCCAGCCAAGACTT
CTTGGGATCCAGGATTTTAAAATTGTATTGAAAGTACAAATGAGTTCCTGTCATGGCTCA
GTGGTAACGAATCTAACTAGTATCCATGGGGACATGGGTTTTATCCCTGCTTTTGCTCAG
TGGGTTGGGGATCTGGCATTGCCATGAGCTGTGGTGTATGTTGCAGATGTGGCTCAGATC
CCATGTTGCTGTGGCATAGCTGCAGCTCCAATTTAACTCCTAGCCTGGGAAATTCCATGT
GTTGTGGGTGTGGCCCTAAAAAAAAATAAAAGAAAAAAAAGTGTAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               65-183, - strand, RNAz p=0.515088

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               65-183, - strand, RNAz p=0.515088

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               65-208, gnl|bosTau2|chr11 (21981003-21980860)
               

               
               65-208, gnl|canFam2|chr10 (59285775-59285933)
               

               
               65-208, gnl|danRer3|chr6 (2948203-2948056)
               

               
               65-208, gnl|dasNov1|scaffold_149258 (1391-1239)
               

               
               65-208, gnl|echTel1|scaffold_324776 (46968-46810)
               

               
               65-208, gnl|galGal2|chr3 (2360469-2360312)
               

               
               65-208, gnl|hg17|chr2 (55376059-55376217)
               

               
               65-208, gnl|Hg17|chr2 (55376217-55376074)
               

               
               65-208, gnl|mm7|chr11 (29496434-29496276)
               

               
               65-208, gnl|Mm7|chr11 (29496274-29496417)
               

               
               65-208, gnl|monDom2|scaffold_1 (18156533-18156701)
               

               
               65-208, gnl|oryCun1|scaffold_137725 (1031-875)
               

               
               65-208, gnl|panTro1|chr12 (57506455-57506613)
               

               
               65-208, gnl|rheMac2|chr13 (55564335-55564493)
               

               
               65-208, gnl|rn3|chr14 (110584874-110584716)
               

               
               65-208, gnl|tetNig1|chrUn_random (47697583-47697433)
               

               
               65-208, gnl|xenTro1|scaffold_234 (773426-773280)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-208, gnl|bosTau2|chr11 (21981003-21980860)
               

               
               65-208, gnl|canFam2|chr10 (59285775-59285933)
               

               
               65-208, gnl|danRer3|chr6 (2948203-2948056)
               

               
               65-208, gnl|dasNov1|scaffold_149258 (1391-1239)
               

               
               65-208, gnl|echTel1|scaffold_324776 (46968-46810)
               

               
               65-208, gnl|galGal2|chr3 (2360469-2360312)
               

               
               65-208, gnl|hg17|chr2 (55376059-55376217)
               

               
               65-208, gnl|Hg17|chr2 (55376217-55376074)
               

               
               65-208, gnl|mm7|chr11 (29496434-29496276)
               

               
               65-208, gnl|Mm7|chr11 (29496274-29496417)
               

               
               65-208, gnl|monDom2|scaffold_1 (18156533-18156701)
               

               
               65-208, gnl|oryCun1|scaffold_137725 (1031-875)
               

               
               65-208, gnl|panTro1|chr12 (57506455-57506613)
               

               
               65-208, gnl|rheMac2|chr13 (55564335-55564493)
               

               
               65-208, gnl|rn3|chr14 (110584874-110584716)
               

               
               65-208, gnl|tetNig1|chrUn_random (47697583-47697433)
               

               
               65-208, gnl|xenTro1|scaffold_234 (773426-773280)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ski (0.146735)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)
               

               
               ecc (0.115035)

	65-208, gnl\|bosTau2\|chr11 (21981003-21980860)
	65-208, gnl\|canFam2\|chr10 (59285775-59285933)
	65-208, gnl\|danRer3\|chr6 (2948203-2948056)
	65-208, gnl\|dasNov1\|scaffold_149258 (1391-1239)
	65-208, gnl\|echTel1\|scaffold_324776 (46968-46810)
	65-208, gnl\|galGal2\|chr3 (2360469-2360312)
	65-208, gnl\|hg17\|chr2 (55376059-55376217)
	65-208, gnl\|Hg17\|chr2 (55376217-55376074)
	65-208, gnl\|mm7\|chr11 (29496434-29496276)
	65-208, gnl\|Mm7\|chr11 (29496274-29496417)
	65-208, gnl\|monDom2\|scaffold_1 (18156533-18156701)
	65-208, gnl\|oryCun1\|scaffold_137725 (1031-875)
	65-208, gnl\|panTro1\|chr12 (57506455-57506613)
	65-208, gnl\|rheMac2\|chr13 (55564335-55564493)
	65-208, gnl\|rn3\|chr14 (110584874-110584716)
	65-208, gnl\|tetNig1\|chrUn_random (47697583-47697433)
	65-208, gnl\|xenTro1\|scaffold_234 (773426-773280)