Non-Coding RNA Search

Ss1.1-Mixc-0025o02.5

Sequence:


               
               ACCCCAGCTGCCCTGGCCGAGCTGCTCGACCTGCTGGACAGGAAAGCCATCTCTTCGTCT
GCAGCTAAAAAGGTGTTTGAGGAACTGTGGAGGAGCGAAGGCAAGACCCCAACACAGATC
GTTGCGGAAAAGAAGCTTGAACTGATGCAGGACCCGGAGGAGCTGGAGCAGCTCTGCCGT
GCCACGCTGGAGGCGCATCCTGGAGTGGTGATGGATCTGAAGAAGGGAAACCCCAGAGCA
ATCAACAAGCTGATTGGATTGGTCCGAAAAACGACTCTCGGCCGAGCAGATCCAGCTGTG
ATCAAGGAGGTGCTAGAGAGGCAGCTGTCATCGTGACGGTCCCAGCCCAAGCCAGGGCCT
GCAAGCTGACGTCCCAGCCCAGCCGGACAGCGCTGCCCAAGCTGCACCTTGATGTTCTGG
CTCCACGAAGACCAGGCTTCGCCCTGTCGCTTCACTGGCGTCACACGGCTCCCTAAGATG
CAGAACAGCTTGTTCCAGTGCTGCGATCAGGCAGACGTACTGTTTCAAATTCTGTCACAT
CCTAAGGAAACGTTTCCTTTGGTAGGTCTCTCAACAAATATTTTGAAGCCCACCCTAAGG
GCCGGGGGTTGTTCTAGGTGCCGGAGTTTAGCAGTGACAAGAGAGACCGGGATCTGGATG
CAGGATCGGGTTTGGGGACCTCTCAGGACATTCATCTCCATACCAGGAACTAGTTGTAGT
TACCCATCCACCAAGTAAAAGGAATGTTGCCCATTTGACTCCCCAGGGAGCCCAGGAGGC
AGAGGGTCTGAGAAGTGATTTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCAGCTGCCCTGGCCGAGCTGCTCGACCTGCTGGACAGGAAAGCCATCTCTTCGTCT
GCAGCTAAAAAGGTGTTTGAGGAACTGTGGAGGAGCGAAGGCAAGACCCCAACACAGATC
GTTGCGGAAAAGAAGCTTGAACTGATGCAGGACCCGGAGGAGCTGGAGCAGCTCTGCCGT
GCCACGCTGGAGGCGCATCCTGGAGTGGTGATGGATCTGAAGAAGGGAAACCCCAGAGCA
ATCAACAAGCTGATTGGATTGGTCCGAAAAACGACTCTCGGCCGAGCAGATCCAGCTGTG
ATCAAGGAGGTGCTAGAGAGGCAGCTGTCATCGTGACGGTCCCAGCCCAAGCCAGGGCCT
GCAAGCTGACGTCCCAGCCCAGCCGGACAGCGCTGCCCAAGCTGCACCTTGATGTTCTGG
CTCCACGAAGACCAGGCTTCGCCCTGTCGCTTCACTGGCGTCACACGGCTCCCTAAGATG
CAGAACAGCTTGTTCCAGTGCTGCGATCAGGCAGACGTACTGTTTCAAATTCTGTCACAT
CCTAAGGAAACGTTTCCTTTGGTAGGTCTCTCAACAAATATTTTGAAGCCCACCCTAAGG
GCCGGGGGTTGTTCTAGGTGCCGGAGTTTAGCAGTGACAAGAGAGACCGGGATCTGGATG
CAGGATCGGGTTTGGGGACCTCTCAGGACATTCATCTCCATACCAGGAACTAGTTGTAGT
TACCCATCCACCAAGTAAAAGGAATGTTGCCCATTTGACTCCCCAGGGAGCCCAGGAGGC
AGAGGGTCTGAGAAGTGATTTGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61812396|ref|XP_608326.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812396|ref|XP_608326.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               92-209, - strand, RNAz p=0.689516

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               92-209, - strand, RNAz p=0.689516

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               68-209, gnl|bosTau2|chr12 (39616561-39616702)
               

               
               68-209, gnl|Hg17|chr4 (152951658-152951517)
               

               
               68-209, gnl|Mm7|chr3 (85765127-85765268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-209, gnl|bosTau2|chr12 (39616561-39616702)
               

               
               68-209, gnl|Hg17|chr4 (152951658-152951517)
               

               
               68-209, gnl|Mm7|chr3 (85765127-85765268)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               cli (0.152812)
               

               
               che (0.136314)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cli (0.152812)
               

               
               che (0.136314)

	68-209, gnl\|bosTau2\|chr12 (39616561-39616702)
	68-209, gnl\|Hg17\|chr4 (152951658-152951517)
	68-209, gnl\|Mm7\|chr3 (85765127-85765268)