Non-Coding RNA Search

Ss1.1-Mixc-0025o11.3

Sequence:


               
               CGGGCTTTGGCGCGCCCGGGCCGGGCATACATTACGCGCCGCCCGCGCCGCCGCCTTCGG
TATCTTTGACGACCCGGCCGCTGCCGCCGCAGCAGCAGCGCTGGGCTTGGCGCCGCCCGC
CTCCCGAGGTCTCCTCACGCCGCCGGCGTCTCCGCTGGAGCTACTAGAGGCCAAGCCCAA
GCGCGGCCGCCGCTCCTGGCCGCGCAAGCGCACCGCCACGCATACCTGCAGCTACGCGGG
CTGCGGCAAGACCTACACAAAGAGCTCGCACCTCAAGGCGCACCTGCGCACGCATACAGG
CGAGAAGCCCTACCACTGCAACTGGGACGGCTGCGGCTGGAAGTTTGCGCGATCCGACGA
ACTCACGCGCCACTACCGCAAACACACAGGCCACCGGCCATTCCAATGCCATCTGTGCGA
CCGTGCCTTCTCACGCTCTGACCACCTGGCGCTGCACATGAAGCGGCACATGTAGCCTGA
ACACCCCCACCCCGCCCACCCGCGCGCGGCCGTGGCGGGTCCCACGCGCCGGGCACGGCC
CCCTTCCAAACTGTGACTGGTATTTATTGGGCCCAGAGGACCGGGCCGGGCACAGCGTGG
CCACCAAACGACGCTGCCCGGACCCCATCAGAGACTGAAGGGCCCGGTGGGAGAAGACCA
CGATCCTCCTTGACGAATTTTGTTTTCAAAATGGTGCAATAATTAAGTGTCGTCTTCCCT
CCCCCAGCCCACCGGGTCTACACTAGAGGATCGAGGCTTGATGCCTTGTGAAAAATACAG
CCTTAATTTGTACTGTGCAACATTTTTTATAATATTGTACATAGTGACTGTGACAGATAT
TGTATTTACTGTAAATAGGAAGACAGGTGGGCATTTTGACTGCCTGGTTTGTTTTTATAA
GATTTTGCTGTTTTTTTTTTTAATTAAAAAAAATTTTGCATCTTTTGAAAATAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTTTGGCGCGCCCGGGCCGGGCATACATTACGCGCCGCCCGCGCCGCCGCCTTCGG
TATCTTTGACGACCCGGCCGCTGCCGCCGCAGCAGCAGCGCTGGGCTTGGCGCCGCCCGC
CTCCCGAGGTCTCCTCACGCCGCCGGCGTCTCCGCTGGAGCTACTAGAGGCCAAGCCCAA
GCGCGGCCGCCGCTCCTGGCCGCGCAAGCGCACCGCCACGCATACCTGCAGCTACGCGGG
CTGCGGCAAGACCTACACAAAGAGCTCGCACCTCAAGGCGCACCTGCGCACGCATACAGG
CGAGAAGCCCTACCACTGCAACTGGGACGGCTGCGGCTGGAAGTTTGCGCGATCCGACGA
ACTCACGCGCCACTACCGCAAACACACAGGCCACCGGCCATTCCAATGCCATCTGTGCGA
CCGTGCCTTCTCACGCTCTGACCACCTGGCGCTGCACATGAAGCGGCACATGTAGCCTGA
ACACCCCCACCCCGCCCACCCGCGCGCGGCCGTGGCGGGTCCCACGCGCCGGGCACGGCC
CCCTTCCAAACTGTGACTGGTATTTATTGGGCCCAGAGGACCGGGCCGGGCACAGCGTGG
CCACCAAACGACGCTGCCCGGACCCCATCAGAGACTGAAGGGCCCGGTGGGAGAAGACCA
CGATCCTCCTTGACGAATTTTGTTTTCAAAATGGTGCAATAATTAAGTGTCGTCTTCCCT
CCCCCAGCCCACCGGGTCTACACTAGAGGATCGAGGCTTGATGCCTTGTGAAAAATACAG
CCTTAATTTGTACTGTGCAACATTTTTTATAATATTGTACATAGTGACTGTGACAGATAT
TGTATTTACTGTAAATAGGAAGACAGGTGGGCATTTTGACTGCCTGGTTTGTTTTTATAA
GATTTTGCTGTTTTTTTTTTTAATTAAAAAAAATTTTGCATCTTTTGAAAATAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               297-605, gnl|bosTau2|chr7 (5565442-5565749)
               

               
               297-605, gnl|Hg17|chr19 (16298664-16298967)
               

               
               297-605, gnl|Mm7|chr8 (70843636-70843936)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               297-605, gnl|bosTau2|chr7 (5565442-5565749)
               

               
               297-605, gnl|Hg17|chr19 (16298664-16298967)
               

               
               297-605, gnl|Mm7|chr8 (70843636-70843936)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               cga (0.558191)
               

               
               cag (0.453583)
               

               
               cst (0.420109)
               

               
               pla (0.401016)
               

               
               cly (0.361925)
               

               
               jca (0.34188)
               

               
               csp (0.322373)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               cag (0.453583)
               

               
               cst (0.420109)
               

               
               pla (0.401016)
               

               
               cly (0.361925)
               

               
               jca (0.34188)
               

               
               csp (0.322373)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	297-605, gnl\|bosTau2\|chr7 (5565442-5565749)
	297-605, gnl\|Hg17\|chr19 (16298664-16298967)
	297-605, gnl\|Mm7\|chr8 (70843636-70843936)

	cga (0.558191)
	cag (0.453583)
	cst (0.420109)
	pla (0.401016)
	cly (0.361925)
	jca (0.34188)
	csp (0.322373)
	csk (0.281492)
	che (0.272628)
	nep (0.183925)
	sto (0.179824)
	ton (0.1755)
	cut (0.169924)
	cki (0.165235)
	lnt (0.142308)
	hlv (0.139256)
	cov (0.132153)
	clu (0.119646)
	med (0.116252)
	cbl (0.114797)
	ldo (0.0970026)