Non-Coding RNA Search

Ss1.1-Mixc-0025p13.3

Sequence:


               
               TGCAAGAAGAGGCAACACGGAATAGAAAGAGGATCCCAATAGCTTCCTTGAAACTCAGGA
GAGTGGATACTCCGGCTTTGACCACCTAAGACGCCCCTCTTGCTCCAAAGAGTATAACTC
CATTCCTTATTCTGAGGCCTCTATTTATCCTGTTCCCCAAGGATGGAGCCACTACTAGGA
GTAAAAATTGGCTGCCTGTTTGCCCTGCTGGTTCTCACTCTAATCTGTGGTCTTATTCCC
ATCTGCTTCAAGTGGTTCCAGACTGATAGAGCCACAGGTCGTCACCGCCGGATCCTCAGC
CTCCTGGGCTGCACTTCTGCAGGTGTTTTCCTGGGAGCAGGGTTCATGCACATGACTGCT
GAAGCCTTGGAGGGAATTGAGTCAGAGATCCAGAAGTTTGTGATACAGAACAGGACAAAA
AGTAAGGGAAATTCTTCTGATGATGCTGATTCATCTAATGTGGAGTATCCCTATGGAGAG
CTCATCATTTCCCTAGGCTTCTTCTTTGTCTTCTTTTTGGAGTCACTGGTATTGCAGTGC
TGTCCTGGGGCTGCTGGAAGATCAACAGTGGAGGAGCAAGAATGGGGAATCCTGAACTCA
GAGTACACCTGCCATGCCTGGCTTCAAAGGCAAACTTCAAGAAAAACTAAATAAAAATAT
CTGACACAGGAAATAATTTCCCTGAAGCACCACCCTGTTCTGTTTTCTGTGGGGCTGCAG
CTAACAGTCGCAGCTACCGTGCAGCTCTGTCTTGCTGTCTTGGCTCACAAGGGGCTCGTG
GTGTTTGGTGTGGGACTGAGGCTGGTAAAGATAGGCACTGGGTCATGCTGGGCCATTCTC
TCCATATTGTCACTAGCTCTCATGTCCCCCCTGGGCCTAGCCCTAGGGCTGGTGGTGTTT
CAAGGAGACTCTGAAGGAGGGAAAGGCTTGGCCCAGGCTGTGTTAGAAGGTGTGGCAGCA
GGCACCTTCCTATATGTCACCTTCCTAGAAATTCTGCCCCGAGAGCTAGCAGGTCCTGAA
GGCCCTCTGGCTAAGTGGGGCTGTGTAGCTGCTGGTTTTGCCTTCATGGCCTTTATTGCC
TTGTGGGCCTGAGAGATTCCTAACTTTTCTCATAGACCTAAGATGACCTCCCTACCTCCA
AGAGGTGCCTCCCAAATGATTTGAACCCTCAGACATTTCTTCCCTGAAACAAAGTGACTT
TCACCGGGCATCTTTCCCACAAACTGGATCCCAGTTTCTCACTACACAAGATGCCATTTC
TCATGCAGGACTGAGAAAAAGGATGTTTCGGTTGAGTGCCTTTTAAATGCAGGATTGATA
TAAAGACCATCACTCCAGAATTTGATTCTGGTCCCATTTGTGCTACTGTGTGTAATAAAA
TGTCCATTTTATCCTTCCCCTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAAGAAGAGGCAACACGGAATAGAAAGAGGATCCCAATAGCTTCCTTGAAACTCAGGA
GAGTGGATACTCCGGCTTTGACCACCTAAGACGCCCCTCTTGCTCCAAAGAGTATAACTC
CATTCCTTATTCTGAGGCCTCTATTTATCCTGTTCCCCAAGGATGGAGCCACTACTAGGA
GTAAAAATTGGCTGCCTGTTTGCCCTGCTGGTTCTCACTCTAATCTGTGGTCTTATTCCC
ATCTGCTTCAAGTGGTTCCAGACTGATAGAGCCACAGGTCGTCACCGCCGGATCCTCAGC
CTCCTGGGCTGCACTTCTGCAGGTGTTTTCCTGGGAGCAGGGTTCATGCACATGACTGCT
GAAGCCTTGGAGGGAATTGAGTCAGAGATCCAGAAGTTTGTGATACAGAACAGGACAAAA
AGTAAGGGAAATTCTTCTGATGATGCTGATTCATCTAATGTGGAGTATCCCTATGGAGAG
CTCATCATTTCCCTAGGCTTCTTCTTTGTCTTCTTTTTGGAGTCACTGGTATTGCAGTGC
TGTCCTGGGGCTGCTGGAAGATCAACAGTGGAGGAGCAAGAATGGGGAATCCTGAACTCA
GAGTACACCTGCCATGCCTGGCTTCAAAGGCAAACTTCAAGAAAAACTAAATAAAAATAT
CTGACACAGGAAATAATTTCCCTGAAGCACCACCCTGTTCTGTTTTCTGTGGGGCTGCAG
CTAACAGTCGCAGCTACCGTGCAGCTCTGTCTTGCTGTCTTGGCTCACAAGGGGCTCGTG
GTGTTTGGTGTGGGACTGAGGCTGGTAAAGATAGGCACTGGGTCATGCTGGGCCATTCTC
TCCATATTGTCACTAGCTCTCATGTCCCCCCTGGGCCTAGCCCTAGGGCTGGTGGTGTTT
CAAGGAGACTCTGAAGGAGGGAAAGGCTTGGCCCAGGCTGTGTTAGAAGGTGTGGCAGCA
GGCACCTTCCTATATGTCACCTTCCTAGAAATTCTGCCCCGAGAGCTAGCAGGTCCTGAA
GGCCCTCTGGCTAAGTGGGGCTGTGTAGCTGCTGGTTTTGCCTTCATGGCCTTTATTGCC
TTGTGGGCCTGAGAGATTCCTAACTTTTCTCATAGACCTAAGATGACCTCCCTACCTCCA
AGAGGTGCCTCCCAAATGATTTGAACCCTCAGACATTTCTTCCCTGAAACAAAGTGACTT
TCACCGGGCATCTTTCCCACAAACTGGATCCCAGTTTCTCACTACACAAGATGCCATTTC
TCATGCAGGACTGAGAAAAAGGATGTTTCGGTTGAGTGCCTTTTAAATGCAGGATTGATA
TAAAGACCATCACTCCAGAATTTGATTCTGGTCCCATTTGTGCTACTGTGTGTAATAAAA
TGTCCATTTTATCCTTCCCCTTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               ZIP2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               ZIP2_HUMAN

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-279, gnl|bosTau2|chr10 (15538155-15538430)
               

               
               3-279, gnl|Hg17|chr14 (20537293-20537562)
               

               
               3-279, gnl|Mm7|chr14 (47227342-47227596)
               


               
               461-587, gnl|bosTau2|chr10 (15539981-15540107)
               

               
               461-587, gnl|Hg17|chr14 (20538947-20539073)
               

               
               461-587, gnl|Mm7|chr14 (47228580-47228706)
               


               
               707-1309, gnl|bosTau2|chr10 (15540227-15540825)
               

               
               707-1309, gnl|Hg17|chr14 (20539193-20539789)
               

               
               707-1309, gnl|Mm7|chr14 (47228826-47229411)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-279, gnl|bosTau2|chr10 (15538155-15538430)
               

               
               3-279, gnl|Hg17|chr14 (20537293-20537562)
               

               
               3-279, gnl|Mm7|chr14 (47227342-47227596)
               


               
               461-587, gnl|bosTau2|chr10 (15539981-15540107)
               

               
               461-587, gnl|Hg17|chr14 (20538947-20539073)
               

               
               461-587, gnl|Mm7|chr14 (47228580-47228706)
               


               
               707-1309, gnl|bosTau2|chr10 (15540227-15540825)
               

               
               707-1309, gnl|Hg17|chr14 (20539193-20539789)
               

               
               707-1309, gnl|Mm7|chr14 (47228826-47229411)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.509771)
               

               
               pla (0.267344)
               

               
               ute (0.265569)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.509771)
               

               
               pla (0.267344)
               

               
               ute (0.265569)

	3-279, gnl\|bosTau2\|chr10 (15538155-15538430)
	3-279, gnl\|Hg17\|chr14 (20537293-20537562)
	3-279, gnl\|Mm7\|chr14 (47227342-47227596)

	461-587, gnl\|bosTau2\|chr10 (15539981-15540107)
	461-587, gnl\|Hg17\|chr14 (20538947-20539073)
	461-587, gnl\|Mm7\|chr14 (47228580-47228706)

	707-1309, gnl\|bosTau2\|chr10 (15540227-15540825)
	707-1309, gnl\|Hg17\|chr14 (20539193-20539789)
	707-1309, gnl\|Mm7\|chr14 (47228826-47229411)