Non-Coding RNA Search

Ss1.1-Mixc-0026,m17.5

Sequence:


               
               AAGCACCCAGTCCCCAAGACCTTCTCCCTAGCTTTGCCCAAGGCCTAGGGAAACCAAAAA
GTGGCGGGTTTGACACGAGGCCGCTCCTCACCCCCATGCACTTTTTCTGACACGGTTTTC
AGGTCTAAACAGGGGCTGCTCCAGTCCATCACCTCCGTGGTTTGAAGCCACCACCATTGA
ACTTCCCCATGGCGGTTTCAAGATGCTCCTTCTCCCCTCATTCCTTGCACTTTATTCTCT
TGGGTGGTTTCAGACTGCCCTCGTTTTCTCAGTGGCCATTCGTTAGGTCCCTCAGGGGCT
AAATGACTCCAAATCTGGGATCCTTCCCTCTCAGACTCCCCTATTTCCGCTTAGAATTTG
GGGAACGTATATAGGAGAAGTCACAGAATCCCAGGAAAGGGAATGGGGCTGGGGGAAAGG
GGTGTTTTTCCCCAGGCAGGGTTGTGTCTTTGTGTCTCTCTCTGTGACTGTAACTCCTGC
CCTGCCCCCTCCCAATAAAATGCTTTGGTGTACAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCACCCAGTCCCCAAGACCTTCTCCCTAGCTTTGCCCAAGGCCTAGGGAAACCAAAAA
GTGGCGGGTTTGACACGAGGCCGCTCCTCACCCCCATGCACTTTTTCTGACACGGTTTTC
AGGTCTAAACAGGGGCTGCTCCAGTCCATCACCTCCGTGGTTTGAAGCCACCACCATTGA
ACTTCCCCATGGCGGTTTCAAGATGCTCCTTCTCCCCTCATTCCTTGCACTTTATTCTCT
TGGGTGGTTTCAGACTGCCCTCGTTTTCTCAGTGGCCATTCGTTAGGTCCCTCAGGGGCT
AAATGACTCCAAATCTGGGATCCTTCCCTCTCAGACTCCCCTATTTCCGCTTAGAATTTG
GGGAACGTATATAGGAGAAGTCACAGAATCCCAGGAAAGGGAATGGGGCTGGGGGAAAGG
GGTGTTTTTCCCCAGGCAGGGTTGTGTCTTTGTGTCTCTCTCTGTGACTGTAACTCCTGC
CCTGCCCCCTCCCAATAAAATGCTTTGGTGTACAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               165-277, - strand, RNAz p=0.96795
               

               
               316-514, + strand, RNAz p=0.99692

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-277, - strand, RNAz p=0.96795
               

               
               316-514, + strand, RNAz p=0.99692

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               316-501, AV590500 Bos taurus brain fetus Bos taurus cDNA clone E1BR012H09 
(dbj|AV590500.1|), blast E-value=0, identity=91.75% 
               

               
               316-511, BovGen_05107 normal cattle brain Bos taurus cDNA clone 
(gb|CO876782.1|), blast E-value=0, identity=91.67% 
               

               
               316-514, BovGen_09560 normal cattle brain Bos taurus cDNA clone 
(gb|CO881235.1|), blast E-value=0, identity=92.27% 
               

               
               316-514, nae06a03.x1 Dog eye eye minus lens and cornea. Unnormalized (nae) 
(gb|DN876390.1|), blast E-value=0, identity=88.67% 
               

               
               316-514, LB02825.CR_K19 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV912933.1|), 
blast E-value=0, identity=92.27% 
               

               
               316-514, LB0289.CR_J09 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV915996.1|), 
blast E-value=0, identity=92.27%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               316-501, AV590500 Bos taurus brain fetus Bos taurus cDNA clone E1BR012H09 
(dbj|AV590500.1|), blast E-value=0, identity=91.75% 
               

               
               316-511, BovGen_05107 normal cattle brain Bos taurus cDNA clone 
(gb|CO876782.1|), blast E-value=0, identity=91.67% 
               

               
               316-514, BovGen_09560 normal cattle brain Bos taurus cDNA clone 
(gb|CO881235.1|), blast E-value=0, identity=92.27% 
               

               
               316-514, nae06a03.x1 Dog eye eye minus lens and cornea. Unnormalized (nae) 
(gb|DN876390.1|), blast E-value=0, identity=88.67% 
               

               
               316-514, LB02825.CR_K19 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV912933.1|), 
blast E-value=0, identity=92.27% 
               

               
               316-514, LB0289.CR_J09 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV915996.1|), 
blast E-value=0, identity=92.27%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020309, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020309, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-514, gnl|bosTau2|chr18 (48576249-48575735)
               

               
               11-514, gnl|Hg17|chr19 (54624972-54624473)
               

               
               11-514, gnl|Mm7|chr7 (41351370-41351865)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-514, gnl|bosTau2|chr18 (48576249-48575735)
               

               
               11-514, gnl|Hg17|chr19 (54624972-54624473)
               

               
               11-514, gnl|Mm7|chr7 (41351370-41351865)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               ecc (0.115035)

	165-277, - strand, RNAz p=0.96795
	316-514, + strand, RNAz p=0.99692

	316-501, AV590500 Bos taurus brain fetus Bos taurus cDNA clone E1BR012H09 (dbj\|AV590500.1\|), blast E-value=0, identity=91.75%
	316-511, BovGen_05107 normal cattle brain Bos taurus cDNA clone (gb\|CO876782.1\|), blast E-value=0, identity=91.67%
	316-514, BovGen_09560 normal cattle brain Bos taurus cDNA clone (gb\|CO881235.1\|), blast E-value=0, identity=92.27%
	316-514, nae06a03.x1 Dog eye eye minus lens and cornea. Unnormalized (nae) (gb\|DN876390.1\|), blast E-value=0, identity=88.67%
	316-514, LB02825.CR_K19 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV912933.1\|), blast E-value=0, identity=92.27%
	316-514, LB0289.CR_J09 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV915996.1\|), blast E-value=0, identity=92.27%

	11-514, gnl\|bosTau2\|chr18 (48576249-48575735)
	11-514, gnl\|Hg17\|chr19 (54624972-54624473)
	11-514, gnl\|Mm7\|chr7 (41351370-41351865)