Ss1.1-Mixc-0026a01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGCGTCTGCTGCGGCGGGTGCGGGAGGTTGCGGCGGCCGGGGCTGGGGTCTGGGCCGG AAGGCTGAGGCTGGCGCGGCGGGCGCTGGGGGCGCTGCCCCCGAGGCGATGATGGGCAAG GAGGAGGAGATTGCGCGGATCGCCCGGAGGCTGGACAAGATGGTGACCAAGAAGAGCGCG GACGGAGCCGTGGATCTGCTGCGGGAGCTGAAGACCATGCCCGTCACGCTGCACCTGCTG CAGTCCACCCGCGTCGGCATGTCTGTCAACGCCCTGCGGAAGCAAAGCTCGGACGAGGAG GTTGTCACACTGGCCAAGTCTCTCATCAAGTCCTGGAAGAAGCTCCTGGATGCTTCAGAC GCCAAAGCCAGGGAGCGGAGGAGGGGCGGGCCTCTGCCCACGTCTTCCAAGGAGGCCTCT GAGGCCAAGGATCCCAGCCGCAAGAGGCCCGAGCTGCCTCGGGTGCCGGCGACCCCAAGG ATCACCACATTTCCCCCGGTGCCGGTCACCTGCGATGCGGTGCGCAACAAGTGTCGCGAG ATGCTGACCGCCGCCCTGCAGACGGACCATGACCACACGGCCGTCGGAGCAGACTGCGAG CGCCTGTCAGCCCAGATCGAGGAACGCATCTTCCGGGCCGTGGGGAACACGGACATGAAG TACAAGAACCGCGTGCGGAGCCGCCTCTCTAACCTCAAGGACGCCAAGAACCCCGGCCTG CGGCGCAGCGTGCTGTGCGGGGCCATCACGCCCCAGCAGATCGCCGTGATGACGTCAGAG GAGATGGCCAGCGACGAGCTGAAGGAGATCCGCAAGGCCATGACCAAGGAGGCCATCCGC GAGCACCAGATGGCCCGCACGGGCGGCACGCAGACGGACCTGTTCACTTGCGGCAAGTGC CGGAAGAAGAACTGCACCTACACGCAGGTGCAGACCCGCAGCTCCGACGAGCCTATGACC ACTTTTGTTGTCTGCAACGAGTGTGGAAACCGCTGGAAGTTCTGCTGAGGCTTTGTGCAC GTGCGCCTGCAGCCTTGGGCCGAGGCCAGCGCTGGCCAGCGCCCTTGCCCCATCTTCTGC CGACAGATGCAGCTTCTCTGGAGACCTGCCCTGTGCCCACCTGGCCTTCCTCGGAAGGCA GCACGCACCCCCACCCCTACCTACAGTGCACCTTTCTCCCCCTCCCCACAAAGTATTAAA TGTTTCTTTTTGCCAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGCGTCTGCTGCGGCGGGTGCGGGAGGTTGCGGCGGCCGGGGCTGGGGTCTGGGCCGG AAGGCTGAGGCTGGCGCGGCGGGCGCTGGGGGCGCTGCCCCCGAGGCGATGATGGGCAAG GAGGAGGAGATTGCGCGGATCGCCCGGAGGCTGGACAAGATGGTGACCAAGAAGAGCGCG GACGGAGCCGTGGATCTGCTGCGGGAGCTGAAGACCATGCCCGTCACGCTGCACCTGCTG CAGTCCACCCGCGTCGGCATGTCTGTCAACGCCCTGCGGAAGCAAAGCTCGGACGAGGAG GTTGTCACACTGGCCAAGTCTCTCATCAAGTCCTGGAAGAAGCTCCTGGATGCTTCAGAC GCCAAAGCCAGGGAGCGGAGGAGGGGCGGGCCTCTGCCCACGTCTTCCAAGGAGGCCTCT GAGGCCAAGGATCCCAGCCGCAAGAGGCCCGAGCTGCCTCGGGTGCCGGCGACCCCAAGG ATCACCACATTTCCCCCGGTGCCGGTCACCTGCGATGCGGTGCGCAACAAGTGTCGCGAG ATGCTGACCGCCGCCCTGCAGACGGACCATGACCACACGGCCGTCGGAGCAGACTGCGAG CGCCTGTCAGCCCAGATCGAGGAACGCATCTTCCGGGCCGTGGGGAACACGGACATGAAG TACAAGAACCGCGTGCGGAGCCGCCTCTCTAACCTCAAGGACGCCAAGAACCCCGGCCTG CGGCGCAGCGTGCTGTGCGGGGCCATCACGCCCCAGCAGATCGCCGTGATGACGTCAGAG GAGATGGCCAGCGACGAGCTGAAGGAGATCCGCAAGGCCATGACCAAGGAGGCCATCCGC GAGCACCAGATGGCCCGCACGGGCGGCACGCAGACGGACCTGTTCACTTGCGGCAAGTGC CGGAAGAAGAACTGCACCTACACGCAGGTGCAGACCCGCAGCTCCGACGAGCCTATGACC ACTTTTGTTGTCTGCAACGAGTGTGGAAACCGCTGGAAGTTCTGCTGAGGCTTTGTGCAC GTGCGCCTGCAGCCTTGGGCCGAGGCCAGCGCTGGCCAGCGCCCTTGCCCCATCTTCTGC CGACAGATGCAGCTTCTCTGGAGACCTGCCCTGTGCCCACCTGGCCTTCCTCGGAAGGCA GCACGCACCCCCACCCCTACCTACAGTGCACCTTTCTCCCCCTCCCCACAAAGTATTAAA TGTTTCTTTTTGCCAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 812-929, - strand, RNAz p=0.988844 | |
| 831-929, - strand, RNAz p=0.907682 | |
| 1032-1148, - strand, RNAz p=0.544848 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 812-929, - strand, RNAz p=0.988844 | |
| 831-929, - strand, RNAz p=0.907682 | |
| 1032-1148, - strand, RNAz p=0.544848 |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 1-181, gnl|bosTau2|chr13 (35071459-35071279) | |
| 1-181, gnl|Hg17|chr20 (62165003-62165182) | |
| 239-349, gnl|bosTau2|chr13 (35068111-35068001) | |
| 239-349, gnl|canFam2|chr29 (8645144-8645036) | |
| 239-349, gnl|canFam2|chr29 (8645151-8645039) | |
| 239-349, gnl|danRer3|chr2 (23057079-23056914) | |
| 239-349, gnl|danRer3|chr2 (23057018-23056907) | |
| 239-349, gnl|dasNov1|scaffold_13595 (10371-10263) | |
| 239-349, gnl|dasNov1|scaffold_13595 (10376-10256) | |
| 239-349, gnl|echTel1|scaffold_292335 (34570-34464) | |
| 239-349, gnl|echTel1|scaffold_292335 (34575-34457) | |
| 239-349, gnl|fr1|chrUn (43882596-43882714) | |
| 239-349, gnl|fr1|chrUn (43882604-43882718) | |
| 239-349, gnl|galGal2|chr2 (109448274-109448166) | |
| 239-349, gnl|Hg17|chr20 (62168707-62168817) | |
| 239-349, gnl|hg17|chr3 (37292310-37292418) | |
| 239-349, gnl|hg17|chr9 (38468576-38468696) | |
| 239-349, gnl|loxAfr1|scaffold_116884 (933-1041) | |
| 239-349, gnl|loxAfr1|scaffold_116884 (930-1039) | |
| 239-349, gnl|mm7|chr15 (90965601-90965709) | |
| 239-349, gnl|mm7|chr15 (90965596-90965716) | |
| 239-349, gnl|Mm7|chr2 (182184454-182184564) | |
| 239-349, gnl|monDom2|scaffold_103 (4072456-4072336) | |
| 239-349, gnl|monDom2|scaffold_72 (1517274-1517382) | |
| 239-349, gnl|oryCun1|scaffold_152273 (2490-2382) | |
| 239-349, gnl|oryCun1|scaffold_152273 (2495-2375) | |
| 239-349, gnl|panTro1|chr11 (81125871-81125979) | |
| 239-349, gnl|panTro1|chr11 (39194229-39194349) | |
| 239-349, gnl|rheMac2|chr15 (44241472-44241586) | |
| 239-349, gnl|rheMac2|chr8 (56595525-56595417) | |
| 239-349, gnl|rn3|chr15 (11879667-11879775) | |
| 239-349, gnl|rn3|chr15 (11879662-11879782) | |
| 239-349, gnl|tetNig1|chrUn_random (16841350-16841458) | |
| 239-349, gnl|tetNig1|chrUn_random (16841345-16841464) | |
| 239-349, gnl|xenTro1|scaffold_8 (1962034-1961930) | |
| 239-349, gnl|xenTro1|scaffold_8 (1962033-1961931) | |
| 434-572, gnl|bosTau2|chr13 (35066146-35066008) | |
| 434-572, gnl|Hg17|chr20 (62171154-62171292) | |
| 434-572, gnl|Mm7|chr2 (182186699-182186837) | |
| 779-929, gnl|bosTau2|chr13 (35065181-35065031) | |
| 779-929, gnl|canFam2|chr24 (50560371-50560528) | |
| 779-929, gnl|danRer3|chr2 (23052497-23052346) | |
| 779-929, gnl|dasNov1|scaffold_126471 (1070-1229) | |
| 779-929, gnl|echTel1|scaffold_292335 (34014-33847) | |
| 779-929, gnl|fr1|chrUn (43886942-43887100) | |
| 779-929, gnl|galGal2|chr20 (9068938-9068781) | |
| 779-929, gnl|hg17|chr20 (62172284-62172458) | |
| 779-929, gnl|Hg17|chr20 (62172284-62172434) | |
| 779-929, gnl|loxAfr1|scaffold_62772 (34058-33890) | |
| 779-929, gnl|mm7|chr2 (182187737-182187895) | |
| 779-929, gnl|Mm7|chr2 (182187737-182187887) | |
| 779-929, gnl|monDom2|scaffold_1 (185082443-185082597) | |
| 779-929, gnl|oryCun1|scaffold_170729 (7623-7755) | |
| 779-929, gnl|panTro1|chr21_random (20063975-20063801) | |
| 779-929, gnl|rheMac2|chr10 (272362-272189) | |
| 779-929, gnl|rn3|chr3 (170743799-170743975) | |
| 779-929, gnl|tetNig1|chrUn_random (16843087-16843238) | |
| 779-929, gnl|xenTro1|scaffold_8 (1956121-1955967) | |
| 993-1215, gnl|bosTau2|chr13 (35064219-35064016) | |
| 993-1215, gnl|canFam2|chr24 (50561173-50561614) | |
| 993-1215, gnl|hg17|chr20 (62173889-62174310) | |
| 993-1215, gnl|Hg17|chr20 (62173962-62174144) | |
| 993-1215, gnl|mm7|chr2 (182188715-182189108) | |
| 993-1215, gnl|Mm7|chr2 (182188781-182188956) | |
| 993-1215, gnl|panTro1|chr21_random (19991961-19992382) | |
| 993-1215, gnl|rheMac2|chr10 (270780-270351) | |
| 993-1215, gnl|rn3|chr3 (170744875-170745289) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-181, gnl|bosTau2|chr13 (35071459-35071279) | |
| 1-181, gnl|Hg17|chr20 (62165003-62165182) | |
| 239-349, gnl|bosTau2|chr13 (35068111-35068001) | |
| 239-349, gnl|canFam2|chr29 (8645144-8645036) | |
| 239-349, gnl|canFam2|chr29 (8645151-8645039) | |
| 239-349, gnl|danRer3|chr2 (23057079-23056914) | |
| 239-349, gnl|danRer3|chr2 (23057018-23056907) | |
| 239-349, gnl|dasNov1|scaffold_13595 (10371-10263) | |
| 239-349, gnl|dasNov1|scaffold_13595 (10376-10256) | |
| 239-349, gnl|echTel1|scaffold_292335 (34570-34464) | |
| 239-349, gnl|echTel1|scaffold_292335 (34575-34457) | |
| 239-349, gnl|fr1|chrUn (43882596-43882714) | |
| 239-349, gnl|fr1|chrUn (43882604-43882718) | |
| 239-349, gnl|galGal2|chr2 (109448274-109448166) | |
| 239-349, gnl|Hg17|chr20 (62168707-62168817) | |
| 239-349, gnl|hg17|chr3 (37292310-37292418) | |
| 239-349, gnl|hg17|chr9 (38468576-38468696) | |
| 239-349, gnl|loxAfr1|scaffold_116884 (933-1041) | |
| 239-349, gnl|loxAfr1|scaffold_116884 (930-1039) | |
| 239-349, gnl|mm7|chr15 (90965601-90965709) | |
| 239-349, gnl|mm7|chr15 (90965596-90965716) | |
| 239-349, gnl|Mm7|chr2 (182184454-182184564) | |
| 239-349, gnl|monDom2|scaffold_103 (4072456-4072336) | |
| 239-349, gnl|monDom2|scaffold_72 (1517274-1517382) | |
| 239-349, gnl|oryCun1|scaffold_152273 (2490-2382) | |
| 239-349, gnl|oryCun1|scaffold_152273 (2495-2375) | |
| 239-349, gnl|panTro1|chr11 (81125871-81125979) | |
| 239-349, gnl|panTro1|chr11 (39194229-39194349) | |
| 239-349, gnl|rheMac2|chr15 (44241472-44241586) | |
| 239-349, gnl|rheMac2|chr8 (56595525-56595417) | |
| 239-349, gnl|rn3|chr15 (11879667-11879775) | |
| 239-349, gnl|rn3|chr15 (11879662-11879782) | |
| 239-349, gnl|tetNig1|chrUn_random (16841350-16841458) | |
| 239-349, gnl|tetNig1|chrUn_random (16841345-16841464) | |
| 239-349, gnl|xenTro1|scaffold_8 (1962034-1961930) | |
| 239-349, gnl|xenTro1|scaffold_8 (1962033-1961931) | |
| 434-572, gnl|bosTau2|chr13 (35066146-35066008) | |
| 434-572, gnl|Hg17|chr20 (62171154-62171292) | |
| 434-572, gnl|Mm7|chr2 (182186699-182186837) | |
| 779-929, gnl|bosTau2|chr13 (35065181-35065031) | |
| 779-929, gnl|canFam2|chr24 (50560371-50560528) | |
| 779-929, gnl|danRer3|chr2 (23052497-23052346) | |
| 779-929, gnl|dasNov1|scaffold_126471 (1070-1229) | |
| 779-929, gnl|echTel1|scaffold_292335 (34014-33847) | |
| 779-929, gnl|fr1|chrUn (43886942-43887100) | |
| 779-929, gnl|galGal2|chr20 (9068938-9068781) | |
| 779-929, gnl|hg17|chr20 (62172284-62172458) | |
| 779-929, gnl|Hg17|chr20 (62172284-62172434) | |
| 779-929, gnl|loxAfr1|scaffold_62772 (34058-33890) | |
| 779-929, gnl|mm7|chr2 (182187737-182187895) | |
| 779-929, gnl|Mm7|chr2 (182187737-182187887) | |
| 779-929, gnl|monDom2|scaffold_1 (185082443-185082597) | |
| 779-929, gnl|oryCun1|scaffold_170729 (7623-7755) | |
| 779-929, gnl|panTro1|chr21_random (20063975-20063801) | |
| 779-929, gnl|rheMac2|chr10 (272362-272189) | |
| 779-929, gnl|rn3|chr3 (170743799-170743975) | |
| 779-929, gnl|tetNig1|chrUn_random (16843087-16843238) | |
| 779-929, gnl|xenTro1|scaffold_8 (1956121-1955967) | |
| 993-1215, gnl|bosTau2|chr13 (35064219-35064016) | |
| 993-1215, gnl|canFam2|chr24 (50561173-50561614) | |
| 993-1215, gnl|hg17|chr20 (62173889-62174310) | |
| 993-1215, gnl|Hg17|chr20 (62173962-62174144) | |
| 993-1215, gnl|mm7|chr2 (182188715-182189108) | |
| 993-1215, gnl|Mm7|chr2 (182188781-182188956) | |
| 993-1215, gnl|panTro1|chr21_random (19991961-19992382) | |
| 993-1215, gnl|rheMac2|chr10 (270780-270351) | |
| 993-1215, gnl|rn3|chr3 (170744875-170745289) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| nje (0.33184) | |
| fce (0.271592) | |
| eep (0.245128) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| fcc (0.197785) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| nje (0.33184) | |
| fce (0.271592) | |
| eep (0.245128) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| fcc (0.197785) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| eje (0.0988338) |