Non-Coding RNA Search

Ss1.1-Mixc-0026b08.3

Sequence:


               
               CGCAGGTACATCCTCTGCTCTGGCTCCAGAAGTTCCTGAAAGGTGTCCTTAACTACAGAG
GGGTCTCCTCCAAGGCAAGCAGGAGATCAAAAGACTATCCCAGCGAGACAGTGAGTGGGG
AGGGCTCCAGAGAGAAGGAAGGGGAACGAGAGACAGAACAGAAGTACGTCAGTTCAGGCT
CTTCTCAGGTGGAAGAGCTGGTGGGCCAAGAAGCCACCCCTTGGCTAGAGTAAGATGGGG
CAGACCACCAGCCCCAAGAGCCCCCAACACTCAGCTGACAGGATTGCCCACCCCCCCCAC
CCCACCCAACTGCTCCATCCTCCTGGGGTCCCGCAATCCCTCAACTGCACAGGGGACTGA
GGGGGACGCAGACTGGCTCAGATGACAGGATGTCTCTTGAGCCTGAGGACATGTCTCCCC
CCCTCCATGTCCCTCTTGCCCCCTTTTCCCACCTCCTTCACTGGGGAGAGAACAAGAGGT
GCTCCTGCTCGCCCTCGGGTGGGGACGGAGGTCCTAGTGTGACCCAGGTGAGGATGACCA
TCCTGCTCGCACGGGGGGGATCCCTTTCCCACATCTGTGCTGTGTCCTTGTTGCTCTGCT
TCCTTTAAATGTGTCAGTGCCTGGGGGGAGGGGAGGGGTGCCCCCCCGACCCCCCTGAAC
CTGACCAAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGGTACATCCTCTGCTCTGGCTCCAGAAGTTCCTGAAAGGTGTCCTTAACTACAGAG
GGGTCTCCTCCAAGGCAAGCAGGAGATCAAAAGACTATCCCAGCGAGACAGTGAGTGGGG
AGGGCTCCAGAGAGAAGGAAGGGGAACGAGAGACAGAACAGAAGTACGTCAGTTCAGGCT
CTTCTCAGGTGGAAGAGCTGGTGGGCCAAGAAGCCACCCCTTGGCTAGAGTAAGATGGGG
CAGACCACCAGCCCCAAGAGCCCCCAACACTCAGCTGACAGGATTGCCCACCCCCCCCAC
CCCACCCAACTGCTCCATCCTCCTGGGGTCCCGCAATCCCTCAACTGCACAGGGGACTGA
GGGGGACGCAGACTGGCTCAGATGACAGGATGTCTCTTGAGCCTGAGGACATGTCTCCCC
CCCTCCATGTCCCTCTTGCCCCCTTTTCCCACCTCCTTCACTGGGGAGAGAACAAGAGGT
GCTCCTGCTCGCCCTCGGGTGGGGACGGAGGTCCTAGTGTGACCCAGGTGAGGATGACCA
TCCTGCTCGCACGGGGGGGATCCCTTTCCCACATCTGTGCTGTGTCCTTGTTGCTCTGCT
TCCTTTAAATGTGTCAGTGCCTGGGGGGAGGGGAGGGGTGCCCCCCCGACCCCCCTGAAC
CTGACCAAAAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               108-292, - strand, RNAz p=0.996849

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-292, - strand, RNAz p=0.996849

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-672, gnl|bosTau2|chr10 (364008-363422)
               

               
               40-672, gnl|Hg17|chr5 (175242931-175243542)
               

               
               40-672, gnl|Mm7|chr13 (53467500-53468093)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-672, gnl|bosTau2|chr10 (364008-363422)
               

               
               40-672, gnl|Hg17|chr5 (175242931-175243542)
               

               
               40-672, gnl|Mm7|chr13 (53467500-53468093)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	40-672, gnl\|bosTau2\|chr10 (364008-363422)
	40-672, gnl\|Hg17\|chr5 (175242931-175243542)
	40-672, gnl\|Mm7\|chr13 (53467500-53468093)