Non-Coding RNA Search

Ss1.1-Mixc-0026b17.5

Sequence:


               
               GAGCCTGCCACCGTCCCCGCCACCACCGCCGCCATGGCCACCCACCGCCTCGTGATGGTT
CGGCACGGCGAGAGCACCTGGAACCAGGAGAACCGCTTCTGCGGCTGGTTTGACGCGGAG
CTGAGCGAGAAGGGGGCCGAGGAGGCCAAGAGGGGGGCCCATGCCATCAAGGACGCAAAG
ATGGAATTTGACATCTGCTACACGTCGGTGCTGAAGCGGGCCATACGCACCCTCTGGACC
ATCCTGGACGGCACGGACCAGATGTGGCTGCCCGTGGTGCGCACCTGGCGCCTCAACGAG
CGGCACTACGGGGGGCTCACCGGCCTCAACAAGGCGGAGACGGCCGCCAAGCATGGGGAG
GAGCAGGTGAAGATCTGGAGGCGCTCCTTCGACATCCCACCGCCCCCCATGGATGAGAAG
CACCCCTACTACAGCTCCATCAGCAAGGAGCGGCGGTACGCAGGCCTGAAGCCCGGGGAA
CTGCCCACGTGCGAGAGCCTCAAGGACACCATTGCCCGGGCCCTGCCCTTCTGGAACGAT
GAGATCGCGCCCCAGATCAAGGCAGGCAAGAGAGTGCTCATCGCAGCCCACGGGAACAGC
CTGCGGGGCATCGTCAAGCATCTGGAAGGGATGTCCGACCAGGCCATCATGGAGCTGAAC
CTGCCCACAGGGATCCCCATCGTGTACGAGCTGGACCAGGCGCTGAAGCCCACCAAGCCC
ATGCGCTTCCTGGGCGACGAGGAGACGGTGCGAAAGGCCATGGAGGCCGTGGCCGCCCAG
GGCAAGGCCAAGTGAAGGGGGGGCTCTGGCAATAAAGGCACCTCACCCCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCTGCCACCGTCCCCGCCACCACCGCCGCCATGGCCACCCACCGCCTCGTGATGGTT
CGGCACGGCGAGAGCACCTGGAACCAGGAGAACCGCTTCTGCGGCTGGTTTGACGCGGAG
CTGAGCGAGAAGGGGGCCGAGGAGGCCAAGAGGGGGGCCCATGCCATCAAGGACGCAAAG
ATGGAATTTGACATCTGCTACACGTCGGTGCTGAAGCGGGCCATACGCACCCTCTGGACC
ATCCTGGACGGCACGGACCAGATGTGGCTGCCCGTGGTGCGCACCTGGCGCCTCAACGAG
CGGCACTACGGGGGGCTCACCGGCCTCAACAAGGCGGAGACGGCCGCCAAGCATGGGGAG
GAGCAGGTGAAGATCTGGAGGCGCTCCTTCGACATCCCACCGCCCCCCATGGATGAGAAG
CACCCCTACTACAGCTCCATCAGCAAGGAGCGGCGGTACGCAGGCCTGAAGCCCGGGGAA
CTGCCCACGTGCGAGAGCCTCAAGGACACCATTGCCCGGGCCCTGCCCTTCTGGAACGAT
GAGATCGCGCCCCAGATCAAGGCAGGCAAGAGAGTGCTCATCGCAGCCCACGGGAACAGC
CTGCGGGGCATCGTCAAGCATCTGGAAGGGATGTCCGACCAGGCCATCATGGAGCTGAAC
CTGCCCACAGGGATCCCCATCGTGTACGAGCTGGACCAGGCGCTGAAGCCCACCAAGCCC
ATGCGCTTCCTGGGCGACGAGGAGACGGTGCGAAAGGCCATGGAGGCCGTGGCCGCCCAG
GGCAAGGCCAAGTGAAGGGGGGGCTCTGGCAATAAAGGCACCTCACCCCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61861624|ref|XP_593016.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61861624|ref|XP_593016.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               303-422, - strand, RNAz p=0.846334
               

               
               463-582, - strand, RNAz p=0.758691

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-422, - strand, RNAz p=0.846334
               

               
               463-582, - strand, RNAz p=0.758691

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-792, gnl|bosTau2|chr12 (31708533-31707766)
               

               
               25-792, gnl|Hg17|chr12 (102927014-102927782)
               

               
               25-792, gnl|Mm7|chr3 (11022358-11021591)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-792, gnl|bosTau2|chr12 (31708533-31707766)
               

               
               25-792, gnl|Hg17|chr12 (102927014-102927782)
               

               
               25-792, gnl|Mm7|chr3 (11022358-11021591)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               mas (3.99579)
               

               
               nms (1.71086)
               

               
               hlv (1.25331)
               

               
               nep (0.551775)
               

               
               ton (0.526501)
               

               
               ldo (0.485013)
               

               
               eru (0.480192)
               

               
               sme (0.305437)
               

               
               ese (0.253004)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (3.99579)
               

               
               nms (1.71086)
               

               
               hlv (1.25331)
               

               
               nep (0.551775)
               

               
               ton (0.526501)
               

               
               ldo (0.485013)
               

               
               eru (0.480192)
               

               
               sme (0.305437)
               

               
               ese (0.253004)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	303-422, - strand, RNAz p=0.846334
	463-582, - strand, RNAz p=0.758691

	25-792, gnl\|bosTau2\|chr12 (31708533-31707766)
	25-792, gnl\|Hg17\|chr12 (102927014-102927782)
	25-792, gnl\|Mm7\|chr3 (11022358-11021591)

	mas (3.99579)
	nms (1.71086)
	hlv (1.25331)
	nep (0.551775)
	ton (0.526501)
	ldo (0.485013)
	eru (0.480192)
	sme (0.305437)
	ese (0.253004)
	tes (0.207814)
	col (0.195008)
	nca (0.136874)
	che (0.136314)
	ste (0.135208)
	ova (0.129132)
	ecc (0.115035)
	jca (0.11396)