Non-Coding RNA Search

Ss1.1-Mixc-0026b18.3

Sequence:


               
               GAGGGCTGCCCGGGACCGCTGCTCTCCGATGGTTTTTATTTTATTTTTAATCTAGAGAAC
AGTATTGGGCAGGAGGCAGAGGTTGGGGATTTGGGCATGGGGGTTCGTCCCTGCTTGTGA
CATTGATTTGTTGGCTTTGCGGCACGCTGTCGGGGTGAGGTGGGGACGTGTACCCACGTC
CCAGAGGGCAGGTGGGTGAGGGAAGACAAGTCCCTGTTGGGGGGCCCCAGGCCCCAGGCC
CAGCCTTGCTGGAGAAGGCTCTCCCCTCCCCTCTCCTACCAACAGAGGCCTGACTTTTTT
TGCTTGACTTTCATGTTTAGGGTGAAGGAAAACTGCCAAACTTCCTATAAGCGAAGACTC
TTTCTGACTGCCCAGAGGGGGGTGGGGAGCCAAGGCCAGAGCTCCAGGAGCCCCCACCCG
GCAGGGCATCTGCCCCGGGTGCGCCCCCGCCCCCCACACCCCGTCTGTCTGCAGCAGGCA
GACTGTCCAGGGAAACAGCCCCTCTTTTCTACACACTCGGCCCCAAGCTGCCCCCCGCCC
CCACTCCACCTCCCTGCCCCCCCTTTTGTAAGTATGTGAAAAGGAAAAAATGCAAACGGA
GTCCTGGCCGGAGCTCCTCCCTCCAGCTGTGACTCTATGTAATAATGTACAGAGAAAGTT
GTTGGTGTTCTAAGACTGTGTGGCTGTGCAATTTCTGTACATTTGCAATTAGAAATATTA
AAGATTTATTTAGCTATTTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGCTGCCCGGGACCGCTGCTCTCCGATGGTTTTTATTTTATTTTTAATCTAGAGAAC
AGTATTGGGCAGGAGGCAGAGGTTGGGGATTTGGGCATGGGGGTTCGTCCCTGCTTGTGA
CATTGATTTGTTGGCTTTGCGGCACGCTGTCGGGGTGAGGTGGGGACGTGTACCCACGTC
CCAGAGGGCAGGTGGGTGAGGGAAGACAAGTCCCTGTTGGGGGGCCCCAGGCCCCAGGCC
CAGCCTTGCTGGAGAAGGCTCTCCCCTCCCCTCTCCTACCAACAGAGGCCTGACTTTTTT
TGCTTGACTTTCATGTTTAGGGTGAAGGAAAACTGCCAAACTTCCTATAAGCGAAGACTC
TTTCTGACTGCCCAGAGGGGGGTGGGGAGCCAAGGCCAGAGCTCCAGGAGCCCCCACCCG
GCAGGGCATCTGCCCCGGGTGCGCCCCCGCCCCCCACACCCCGTCTGTCTGCAGCAGGCA
GACTGTCCAGGGAAACAGCCCCTCTTTTCTACACACTCGGCCCCAAGCTGCCCCCCGCCC
CCACTCCACCTCCCTGCCCCCCCTTTTGTAAGTATGTGAAAAGGAAAAAATGCAAACGGA
GTCCTGGCCGGAGCTCCTCCCTCCAGCTGTGACTCTATGTAATAATGTACAGAGAAAGTT
GTTGGTGTTCTAAGACTGTGTGGCTGTGCAATTTCTGTACATTTGCAATTAGAAATATTA
AAGATTTATTTAGCTATTTTAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               13-105, - strand, RNAz p=0.743178
               

               
               361-474, - strand, RNAz p=0.805932

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-105, - strand, RNAz p=0.743178
               

               
               361-474, - strand, RNAz p=0.805932

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               363-554, - strand, RNAmicro p=0.998435
               

               
               381-461, + strand, RNAmicro p=0.989631
               

               
               6-74, + strand, RNAmicro p=0.931911

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               363-554, - strand, RNAmicro p=0.998435
               

               
               381-461, + strand, RNAmicro p=0.989631
               

               
               6-74, + strand, RNAmicro p=0.931911

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-105, gnl|bosTau2|chr11 (73517196-73517090)
               

               
               1-105, gnl|Hg17|chr9 (121626513-121626643)
               

               
               1-105, gnl|Mm7|chr2 (35737526-35737643)
               


               
               322-742, gnl|bosTau2|chr11 (73517011-73516588)
               

               
               322-742, gnl|Hg17|chr9 (121626932-121627363)
               

               
               322-742, gnl|Mm7|chr2 (35737899-35738305)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-105, gnl|bosTau2|chr11 (73517196-73517090)
               

               
               1-105, gnl|Hg17|chr9 (121626513-121626643)
               

               
               1-105, gnl|Mm7|chr2 (35737526-35737643)
               


               
               322-742, gnl|bosTau2|chr11 (73517011-73516588)
               

               
               322-742, gnl|Hg17|chr9 (121626932-121627363)
               

               
               322-742, gnl|Mm7|chr2 (35737899-35738305)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ute (0.265569)
               

               
               eru (0.240096)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)
               

               
               eru (0.240096)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

	13-105, - strand, RNAz p=0.743178
	361-474, - strand, RNAz p=0.805932

	363-554, - strand, RNAmicro p=0.998435
	381-461, + strand, RNAmicro p=0.989631
	6-74, + strand, RNAmicro p=0.931911

	1-105, gnl\|bosTau2\|chr11 (73517196-73517090)
	1-105, gnl\|Hg17\|chr9 (121626513-121626643)
	1-105, gnl\|Mm7\|chr2 (35737526-35737643)

	322-742, gnl\|bosTau2\|chr11 (73517011-73516588)
	322-742, gnl\|Hg17\|chr9 (121626932-121627363)
	322-742, gnl\|Mm7\|chr2 (35737899-35738305)

	ute (0.265569)
	eru (0.240096)
	nco (0.161734)
	hyp (0.142837)
	ecc (0.115035)