Non-Coding RNA Search

Ss1.1-Mixc-0026c17.5

Sequence:


               
               TTTTTTTTTTTTTAAAAACCTTACTTTCTGTTTAATTCGTTTTGCCAAACAAACACAGTG
AAAACTTTAGTCTGACTAATTGTACAGAAAATAGAATTTGTAACCAGTAGCAAACATAAC
AGTATAGACCTAAGTCCCTGGCAAGCTGGATATCCATCAAGTCACCCAGACGGCCTCCTG
GGAAGGAGGTTCTGGGAGGCAGAGGCACAGATCTGCCAGTTCCAATCAGAGTTACAGGGT
ACACCTGGAAAGGAAAAGCACAAAAAGTAGAACTGATGTTACTTGGATCTCTTATCACTA
CACAGGTAACTTTTCTCTGATTGCTGGCCAAATTCAAAGGTGTTGTCTTCCCAAACCCAC
AGTCCCTGGGCATCCAGCCTGCATCCCTAGGGTATAAGTTTCAAGTTCAGTGGTTCTGAA
GCCTCTGCTTAACCAGAACCTGCAACATAAACTTGGAGGTGGGGGTGAAGGTGGGGAGGA
GTAGACAAAGTCATAATCGCTGGTGTCACCAGTGTAGTCTGAGGTCCCAGACTTCCTTTA
GGAGGAAACAAGAGAGGGTGCCAGGTCACCAGCAAGAGTCCAGTTAAGCCTCAGTACTGT
TAACCAGTGTCCCAGAAATATGAGAGAGTTCAACAGCGGTGGCCTGAGGTCCCCCTAAGA
TGGTAGGAGTCCAGGAATCCCGAAGGCCGTAGGGGGACTCGTTCACATTCCGTGCTTCTT
GCGGATGACAGCCATCGCCAGCAGCCGATCCTTCTCGCGGAGTTCTTCTCGGAGTTTGGC
CTCAGTGAGACGCAGGTGACGGATGCTGCCCTTCATCTCCTTCATCTTCACCTCCATCAG
CGCCAGGATGTCCCGCTGCTCGTTCAGCTTGCGCAGGAGCTCCTCCTCCGTGGTGCCTGA
TGACAACGAGTAAGAGTGGTCGGAGCCAGTATCAGGGAAGCCCTCTTCCCCTACTACCAC
CAACTGGGGGCCCATGGGGCACTCAGCGGCCTCCAGCCCCGCTGTAGCAGCCTCTAGCTC
CGACGCAGCAGCTGCGGCGGCTGCGCCCTCTGCGGCCGCGAACTCCACTTGCACCGTCAG
GTCGATGGGCTTCACGTCTTCTCCCGTGGGAGTGGTGGGCGCCGGCTGGCCAGATCCAGG
AGCCTGGCTGCTGTCTACCGCGGCCTGAAGAGTGAGGAGCACAGCCGCAGAGGCAGACAC
TAGGTTCGGCTGCAGCTGGCCCGTCTGGGCAGTAGAGGCTGACGGCGACGGTTGCGGCGG
CGGCGGCGGCTGCTGCTGCTGTTGTTGTTGCTGCTGTTGTTGTTGTTGCTGCTGCTGCTG
CTGCCTGCGGCGGGCGGCTGCAGCCCCCGCGGGTCGCCGTGCTACTTTGCGCTCGTTGAC
GCCGCGCAGCGGGAAGATGGTGGGGACCCGCACGGTGTAGGTTTTGCGGCCGCCCTGGAA
GTGGACGCTGCAGAGACGGTGGCCTGTGGTGGGCTGGAAGGTGGAGAAGCACCCACTGAC
GCCAGCACGGGACACATTCTTGAGCCAGAGGCGCCGCAGCTCAGCGTCCTTGGGGAACGT
GTAGAAGTGCAACGCCTTATCCCGGTGCGAGTTGTTGTAGCAGCCCGGCACGCAGCACGT
AAAGCCAGGCATGGCTGCGCCGCGCGGCCCGGCCCGGCCCACCGGCCTCCAGAGCCTTTC
GACGGCCGGGTCTATCTGCCGCCGCCCGCCCCTCGACGGGCGGCGCCGCGCGAGGCCTTG
GGCGGCCTCCCACTACTGCCGCCCGGTGCAGCCGGCCTGGCCCGGCGTCCCGTGCCCAGA
ATACGCCTCCCGCCGGCCCGCGCCGAACCACCCGCCCAGCCGCCCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTAAAAACCTTACTTTCTGTTTAATTCGTTTTGCCAAACAAACACAGTG
AAAACTTTAGTCTGACTAATTGTACAGAAAATAGAATTTGTAACCAGTAGCAAACATAAC
AGTATAGACCTAAGTCCCTGGCAAGCTGGATATCCATCAAGTCACCCAGACGGCCTCCTG
GGAAGGAGGTTCTGGGAGGCAGAGGCACAGATCTGCCAGTTCCAATCAGAGTTACAGGGT
ACACCTGGAAAGGAAAAGCACAAAAAGTAGAACTGATGTTACTTGGATCTCTTATCACTA
CACAGGTAACTTTTCTCTGATTGCTGGCCAAATTCAAAGGTGTTGTCTTCCCAAACCCAC
AGTCCCTGGGCATCCAGCCTGCATCCCTAGGGTATAAGTTTCAAGTTCAGTGGTTCTGAA
GCCTCTGCTTAACCAGAACCTGCAACATAAACTTGGAGGTGGGGGTGAAGGTGGGGAGGA
GTAGACAAAGTCATAATCGCTGGTGTCACCAGTGTAGTCTGAGGTCCCAGACTTCCTTTA
GGAGGAAACAAGAGAGGGTGCCAGGTCACCAGCAAGAGTCCAGTTAAGCCTCAGTACTGT
TAACCAGTGTCCCAGAAATATGAGAGAGTTCAACAGCGGTGGCCTGAGGTCCCCCTAAGA
TGGTAGGAGTCCAGGAATCCCGAAGGCCGTAGGGGGACTCGTTCACATTCCGTGCTTCTT
GCGGATGACAGCCATCGCCAGCAGCCGATCCTTCTCGCGGAGTTCTTCTCGGAGTTTGGC
CTCAGTGAGACGCAGGTGACGGATGCTGCCCTTCATCTCCTTCATCTTCACCTCCATCAG
CGCCAGGATGTCCCGCTGCTCGTTCAGCTTGCGCAGGAGCTCCTCCTCCGTGGTGCCTGA
TGACAACGAGTAAGAGTGGTCGGAGCCAGTATCAGGGAAGCCCTCTTCCCCTACTACCAC
CAACTGGGGGCCCATGGGGCACTCAGCGGCCTCCAGCCCCGCTGTAGCAGCCTCTAGCTC
CGACGCAGCAGCTGCGGCGGCTGCGCCCTCTGCGGCCGCGAACTCCACTTGCACCGTCAG
GTCGATGGGCTTCACGTCTTCTCCCGTGGGAGTGGTGGGCGCCGGCTGGCCAGATCCAGG
AGCCTGGCTGCTGTCTACCGCGGCCTGAAGAGTGAGGAGCACAGCCGCAGAGGCAGACAC
TAGGTTCGGCTGCAGCTGGCCCGTCTGGGCAGTAGAGGCTGACGGCGACGGTTGCGGCGG
CGGCGGCGGCTGCTGCTGCTGTTGTTGTTGCTGCTGTTGTTGTTGTTGCTGCTGCTGCTG
CTGCCTGCGGCGGGCGGCTGCAGCCCCCGCGGGTCGCCGTGCTACTTTGCGCTCGTTGAC
GCCGCGCAGCGGGAAGATGGTGGGGACCCGCACGGTGTAGGTTTTGCGGCCGCCCTGGAA
GTGGACGCTGCAGAGACGGTGGCCTGTGGTGGGCTGGAAGGTGGAGAAGCACCCACTGAC
GCCAGCACGGGACACATTCTTGAGCCAGAGGCGCCGCAGCTCAGCGTCCTTGGGGAACGT
GTAGAAGTGCAACGCCTTATCCCGGTGCGAGTTGTTGTAGCAGCCCGGCACGCAGCACGT
AAAGCCAGGCATGGCTGCGCCGCGCGGCCCGGCCCGGCCCACCGGCCTCCAGAGCCTTTC
GACGGCCGGGTCTATCTGCCGCCGCCCGCCCCTCGACGGGCGGCGCCGCGCGAGGCCTTG
GGCGGCCTCCCACTACTGCCGCCCGGTGCAGCCGGCCTGGCCCGGCGTCCCGTGCCCAGA
ATACGCCTCCCGCCGGCCCGCGCCGAACCACCCGCCCAGCCGCCCGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3970864|dbj|BAA34796.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3970864|dbj|BAA34796.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               131-233, - strand, RNAz p=0.87515
               

               
               466-579, - strand, RNAz p=0.845993
               

               
               935-1054, - strand, RNAz p=0.549278

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-233, - strand, RNAz p=0.87515
               

               
               466-579, - strand, RNAz p=0.845993
               

               
               935-1054, - strand, RNAz p=0.549278

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020457, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020457, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-1848, gnl|bosTau2|chr18 (15005206-15007048)
               

               
               13-1848, gnl|Hg17|chr16 (66435599-66433744)
               

               
               13-1848, gnl|Mm7|chr8 (104455806-104454006)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-1848, gnl|bosTau2|chr18 (15005206-15007048)
               

               
               13-1848, gnl|Hg17|chr16 (66435599-66433744)
               

               
               13-1848, gnl|Mm7|chr8 (104455806-104454006)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               elu (0.385356)
               

               
               cut (0.339847)
               

               
               cly (0.241284)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cut (0.339847)
               

               
               cly (0.241284)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	131-233, - strand, RNAz p=0.87515
	466-579, - strand, RNAz p=0.845993
	935-1054, - strand, RNAz p=0.549278

	13-1848, gnl\|bosTau2\|chr18 (15005206-15007048)
	13-1848, gnl\|Hg17\|chr16 (66435599-66433744)
	13-1848, gnl\|Mm7\|chr8 (104455806-104454006)

	elu (0.385356)
	cut (0.339847)
	cly (0.241284)
	nbm (0.198649)
	eje (0.197668)
	nca (0.136874)
	che (0.136314)
	sug (0.127291)
	bla (0.124347)
	ecc (0.115035)
	cty (0.10408)