Non-Coding RNA Search

Ss1.1-Mixc-0026c19.5

Sequence:


               
               GGCGCGCCACAGCTGGCTAGCCATGGNAGGCGACAGCGCCGCGGCGCCGGCACCTTCTTC
CGCTGCTGCTGCTGCTGCTACTGCTCTGCGGCGAGTGTCCCCCGGTGAGCGGCTGCAACG
AGAAGCGCATGCTGGCCATGCTGCCCCGCTGCGGCAAGACCTTCGCCGAAATGATGAAGA
AGGTGGAGGTCTGGAAGTGGTGCAACCTGTCGGAGTTCATCGTGTACTACGAGAGCTTCA
CCAACTGCACTGAGGTGGAGACCAACGTGGTGGGCTGCTACTGGCCCAACCCCCTGGCCC
AGAGCTTCATCACCGGCGTCCACAGGCGCTATTTCCACAACTGCTCAGTGGACAGGCAAC
AGTGGCAGGACCCCCCGGATGAAATTCTCATCCCGCTCATCGTGGTGCCCATCCTGCTGA
CCCTCGCCATGACTGGCCTGGTGGTGTGGCGCAGCAAACGCGCCGCCCAGGTGGTGTGAG
GGCCCGGTGAGTCCGAGGGGCCGCGCCCGGAGAGATGGAAGAAAGTTCCCCCAGGGCTGG
GAGAGCCCGTGGACGCTGCTTCTGCTGCCCCCCGACCCTGCCTGGGTGGCCGTGGGCTGG
TGAAAGAAAATGTGCTGTGGCTGGAGCTTGTGTGCCAGGCACAATTGCCGCTGCTTCGCC
CGCGCTGTCCCCAGCCGGGCTGGGCCTTTGGGGTTCCTAGGTCTCCTTAGCACCTAGTCC
CATGGGGCCCCAGACCCTGCTGCTGCCTTTCCACCGACTCTGCCCCTGGTCCCACTCCAG
CCCTGACTCCACCCCCGGGCCTGACCCCCACCTCCGGCCTTGACCTCACCTCCAGCTCTG
ACCCCACCCTCAGCCCTGGCCCTGACACCCACCATGACCCTATCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCGCCACAGCTGGCTAGCCATGGNAGGCGACAGCGCCGCGGCGCCGGCACCTTCTTC
CGCTGCTGCTGCTGCTGCTACTGCTCTGCGGCGAGTGTCCCCCGGTGAGCGGCTGCAACG
AGAAGCGCATGCTGGCCATGCTGCCCCGCTGCGGCAAGACCTTCGCCGAAATGATGAAGA
AGGTGGAGGTCTGGAAGTGGTGCAACCTGTCGGAGTTCATCGTGTACTACGAGAGCTTCA
CCAACTGCACTGAGGTGGAGACCAACGTGGTGGGCTGCTACTGGCCCAACCCCCTGGCCC
AGAGCTTCATCACCGGCGTCCACAGGCGCTATTTCCACAACTGCTCAGTGGACAGGCAAC
AGTGGCAGGACCCCCCGGATGAAATTCTCATCCCGCTCATCGTGGTGCCCATCCTGCTGA
CCCTCGCCATGACTGGCCTGGTGGTGTGGCGCAGCAAACGCGCCGCCCAGGTGGTGTGAG
GGCCCGGTGAGTCCGAGGGGCCGCGCCCGGAGAGATGGAAGAAAGTTCCCCCAGGGCTGG
GAGAGCCCGTGGACGCTGCTTCTGCTGCCCCCCGACCCTGCCTGGGTGGCCGTGGGCTGG
TGAAAGAAAATGTGCTGTGGCTGGAGCTTGTGTGCCAGGCACAATTGCCGCTGCTTCGCC
CGCGCTGTCCCCAGCCGGGCTGGGCCTTTGGGGTTCCTAGGTCTCCTTAGCACCTAGTCC
CATGGGGCCCCAGACCCTGCTGCTGCCTTTCCACCGACTCTGCCCCTGGTCCCACTCCAG
CCCTGACTCCACCCCCGGGCCTGACCCCCACCTCCGGCCTTGACCTCACCTCCAGCTCTG
ACCCCACCCTCAGCCCTGGCCCTGACACCCACCATGACCCTATCTCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q867B8_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q867B8_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               244-363, - strand, RNAz p=0.685455

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-363, - strand, RNAz p=0.685455

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               165-887, gnl|bosTau2|chr4 (43329313-43330025)
               

               
               165-887, gnl|Hg17|chr7 (44995941-44996705)
               

               
               165-887, gnl|Mm7|chr11 (6628445-6629140)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-887, gnl|bosTau2|chr4 (43329313-43330025)
               

               
               165-887, gnl|Hg17|chr7 (44995941-44996705)
               

               
               165-887, gnl|Mm7|chr11 (6628445-6629140)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	165-887, gnl\|bosTau2\|chr4 (43329313-43330025)
	165-887, gnl\|Hg17\|chr7 (44995941-44996705)
	165-887, gnl\|Mm7\|chr11 (6628445-6629140)