Ss1.1-Mixc-0026d13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGCCGCGGCGCCCGAGACCCGCGAGCACCTCTTCAAGGTGCTGGTCATCGGCGAACT CGGCGTGGGCAAGACCAGCATCATCAAGCGCTACGTCCACCAGCTGTTCTCCCAGCACTA CCGGGCCACCATCGGGGTGGACTTCGCCCTCAAGGTCCTCAATTGGGACAGCAGGACGCT AGTGCGCCTGCAGCTGTGGGACATCGCGGGACAGGAACGGTTTGGCAACATGACCCGAGT ATATTACAAAGAAGCTGTTGGTGCTTTGGTCGTCTTTGATATATCGAGAGGCTCCACATT TGAAGCCGTTTTAAAATGGAAAAATGATCTGGATAGTAAAGTCCACCTTCCAAACGGCAG CCCTATTCCTGCTGTTCTCTTAGCTAACAAGTGTGACCAGAAAAAGGACAGTGGCCAGAA TCCGTCTCAGATGGACCAGTTCTGCAAAGAACATGGCTTTACTGGATGGTTTGAAACCTC TGCAAAGGATAACATAAACATAGATGAAGCAGCCCGGTTCCTAGTGGAGAACATTCTTGC AAACCACCAAAGCTTCCCCAGTGAAGAAAACGATGGCAGAATTAAACTGGATGAGGAGAC CATGAAAAAAGAGAACAAGTCCCAGTGTTGCTGACTTGGCTTCTGCTTCTCTCCTGCGGA CGCAGCCTGACTTGGTTGGAAGCAAATTCCTGGATCGCAGTGGCGGATGTGCTGCTGTGT GAACCTTCCCGGGGCTGTGCCTTAAAATGACAAGGGTGGCACCCCAGGAGCTTGCAAAGA AAGGGGACACTGGTGAAGGAGCCAGCTCTACACCTTCACATAGGAACACTTAGGCTTCCG TTGCTGTTGCAATCTTATCCAGGATAATGTTTACGTCCTTTTTAGCATCTTTTGAAATGA CAGTTCCTCAGGATTTGTTAAGATTTACGCTTCAGTGTGAACACTGGGGTGGTAATAAAA CTCTCCCTGCATCGGTGATAAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGCCGCGGCGCCCGAGACCCGCGAGCACCTCTTCAAGGTGCTGGTCATCGGCGAACT CGGCGTGGGCAAGACCAGCATCATCAAGCGCTACGTCCACCAGCTGTTCTCCCAGCACTA CCGGGCCACCATCGGGGTGGACTTCGCCCTCAAGGTCCTCAATTGGGACAGCAGGACGCT AGTGCGCCTGCAGCTGTGGGACATCGCGGGACAGGAACGGTTTGGCAACATGACCCGAGT ATATTACAAAGAAGCTGTTGGTGCTTTGGTCGTCTTTGATATATCGAGAGGCTCCACATT TGAAGCCGTTTTAAAATGGAAAAATGATCTGGATAGTAAAGTCCACCTTCCAAACGGCAG CCCTATTCCTGCTGTTCTCTTAGCTAACAAGTGTGACCAGAAAAAGGACAGTGGCCAGAA TCCGTCTCAGATGGACCAGTTCTGCAAAGAACATGGCTTTACTGGATGGTTTGAAACCTC TGCAAAGGATAACATAAACATAGATGAAGCAGCCCGGTTCCTAGTGGAGAACATTCTTGC AAACCACCAAAGCTTCCCCAGTGAAGAAAACGATGGCAGAATTAAACTGGATGAGGAGAC CATGAAAAAAGAGAACAAGTCCCAGTGTTGCTGACTTGGCTTCTGCTTCTCTCCTGCGGA CGCAGCCTGACTTGGTTGGAAGCAAATTCCTGGATCGCAGTGGCGGATGTGCTGCTGTGT GAACCTTCCCGGGGCTGTGCCTTAAAATGACAAGGGTGGCACCCCAGGAGCTTGCAAAGA AAGGGGACACTGGTGAAGGAGCCAGCTCTACACCTTCACATAGGAACACTTAGGCTTCCG TTGCTGTTGCAATCTTATCCAGGATAATGTTTACGTCCTTTTTAGCATCTTTTGAAATGA CAGTTCCTCAGGATTTGTTAAGATTTACGCTTCAGTGTGAACACTGGGGTGGTAATAAAA CTCTCCCTGCATCGGTGATAAAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 26-210, gnl|bosTau2|chr29 (1979727-1979911) | |
| 26-210, gnl|canFam2|chr21 (14766922-14766700) | |
| 26-210, gnl|canFam2|chr9 (41472652-41472490) | |
| 26-210, gnl|danRer3|chr24 (14056468-14056308) | |
| 26-210, gnl|danRer3|chr24 (14056484-14056280) | |
| 26-210, gnl|dasNov1|scaffold_104439 (855-678) | |
| 26-210, gnl|dasNov1|scaffold_104439 (875-652) | |
| 26-210, gnl|echTel1|scaffold_285552 (66074-66250) | |
| 26-210, gnl|echTel1|scaffold_285552 (66055-66277) | |
| 26-210, gnl|fr1|chrUn (133313422-133313249) | |
| 26-210, gnl|fr1|chrUn (133313426-133313222) | |
| 26-210, gnl|galGal2|chr1 (179967381-179967205) | |
| 26-210, gnl|galGal2|chr1 (179967397-179967175) | |
| 26-210, gnl|hg17|chr11 (87547983-87548205) | |
| 26-210, gnl|Hg17|chr11 (87548182-87547998) | |
| 26-210, gnl|hg17|chr17 (30761127-30761307) | |
| 26-210, gnl|loxAfr1|scaffold_13903 (24081-24257) | |
| 26-210, gnl|loxAfr1|scaffold_13903 (24063-24284) | |
| 26-210, gnl|mm7|chr7 (84367666-84367490) | |
| 26-210, gnl|mm7|chr7 (84367685-84367463) | |
| 26-210, gnl|Mm7|chr7 (84367484-84367668) | |
| 26-210, gnl|monDom2|scaffold_118 (2299861-2299639) | |
| 26-210, gnl|monDom2|scaffold_19 (42833385-42833213) | |
| 26-210, gnl|oryCun1|scaffold_213737 (642-855) | |
| 26-210, gnl|panTro1|chr19 (34343237-34343417) | |
| 26-210, gnl|panTro1|chr9 (89381705-89381927) | |
| 26-210, gnl|rheMac2|chr14 (86374752-86374974) | |
| 26-210, gnl|rheMac2|chr16 (30680668-30680848) | |
| 26-210, gnl|rn3|chr1 (144862571-144862395) | |
| 26-210, gnl|rn3|chr1 (144862590-144862368) | |
| 26-210, gnl|tetNig1|chr7 (3071289-3071493) | |
| 26-210, gnl|tetNig1|chrUn_random (92536738-92536915) | |
| 26-210, gnl|xenTro1|scaffold_195 (817523-817347) | |
| 26-210, gnl|xenTro1|scaffold_195 (817542-817320) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-210, gnl|bosTau2|chr29 (1979727-1979911) | |
| 26-210, gnl|canFam2|chr21 (14766922-14766700) | |
| 26-210, gnl|canFam2|chr9 (41472652-41472490) | |
| 26-210, gnl|danRer3|chr24 (14056468-14056308) | |
| 26-210, gnl|danRer3|chr24 (14056484-14056280) | |
| 26-210, gnl|dasNov1|scaffold_104439 (855-678) | |
| 26-210, gnl|dasNov1|scaffold_104439 (875-652) | |
| 26-210, gnl|echTel1|scaffold_285552 (66074-66250) | |
| 26-210, gnl|echTel1|scaffold_285552 (66055-66277) | |
| 26-210, gnl|fr1|chrUn (133313422-133313249) | |
| 26-210, gnl|fr1|chrUn (133313426-133313222) | |
| 26-210, gnl|galGal2|chr1 (179967381-179967205) | |
| 26-210, gnl|galGal2|chr1 (179967397-179967175) | |
| 26-210, gnl|hg17|chr11 (87547983-87548205) | |
| 26-210, gnl|Hg17|chr11 (87548182-87547998) | |
| 26-210, gnl|hg17|chr17 (30761127-30761307) | |
| 26-210, gnl|loxAfr1|scaffold_13903 (24081-24257) | |
| 26-210, gnl|loxAfr1|scaffold_13903 (24063-24284) | |
| 26-210, gnl|mm7|chr7 (84367666-84367490) | |
| 26-210, gnl|mm7|chr7 (84367685-84367463) | |
| 26-210, gnl|Mm7|chr7 (84367484-84367668) | |
| 26-210, gnl|monDom2|scaffold_118 (2299861-2299639) | |
| 26-210, gnl|monDom2|scaffold_19 (42833385-42833213) | |
| 26-210, gnl|oryCun1|scaffold_213737 (642-855) | |
| 26-210, gnl|panTro1|chr19 (34343237-34343417) | |
| 26-210, gnl|panTro1|chr9 (89381705-89381927) | |
| 26-210, gnl|rheMac2|chr14 (86374752-86374974) | |
| 26-210, gnl|rheMac2|chr16 (30680668-30680848) | |
| 26-210, gnl|rn3|chr1 (144862571-144862395) | |
| 26-210, gnl|rn3|chr1 (144862590-144862368) | |
| 26-210, gnl|tetNig1|chr7 (3071289-3071493) | |
| 26-210, gnl|tetNig1|chrUn_random (92536738-92536915) | |
| 26-210, gnl|xenTro1|scaffold_195 (817523-817347) | |
| 26-210, gnl|xenTro1|scaffold_195 (817542-817320) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| pla (0.267344) | |
| cov (0.264306) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| csk (0.140746) | |
| ret (0.128733) | |
| cly (0.120642) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| cov (0.264306) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| csk (0.140746) | |
| ret (0.128733) | |
| cly (0.120642) | |
| eje (0.0988338) |