Non-Coding RNA Search

Ss1.1-Mixc-0026e03.5

Sequence:


               
               ACCAATGCTGACATTGACCTTAAAGATGACCTAGGAAACACGCTGGAGAAGAAGGGTGGC
AAGGAGTTTGTGGAAGCTGTTCTGGAACTCCGGAAAAAGAACGGGCCCTTGGAAGTAGCC
GGAGCTGCTGTCAGTGCGGGCCATGGCCTGCCCGCCAAGTTTGTGATCCACTGTAACAGT
CCCGTGTGGGGTGCAGACAAGTGTGAGGAGCTTCTGGAAAAGACAGTGAAGAACTGCTTG
GCCCTGGCAGACGATAAGAAGCTCAAGTCCATCGCCTTTCCATCCATCGGCAGCGGCAGG
AACGGTTTTCCGAAGCAGACGGCAGCTCAGCTGATCCTGAGGGCCATCTCCAGCTACTTC
GTGTCAACCATGTCCTCTTCCATCAAAACGGTGTATTTTGTGCTGTTTGACAGCGAGAGT
ATAGGCATCTACGTGCAGGAAATGGCCAAGCTGGACGCCAACTAGGCTGAGGAACTGCAG
AACCAGCCCGCACCATGCCCCCGCCTCCAACTTGAAAGAAAGCAAGAAAATAATCCCCTC
CGCTCCTCGGGGGAGGCGGGAACCCTTTCATTTTCAGTTTTTGCTCATCTAGGGAAAATG
AGGTTTTGGTTTCCAGTTTAATTGTTTTTGACCTTCTAAAATGTTTTTCCGTTAGCACTG
ATAGTTGACATTACTGTTAAGCACTGTGTTCCAGACCGTGTCTGATTTTAGTGTAACCTA
GGAGATTTTATAGTTTTATTTTAATGAAATCCTGCTTGACGCAGAGCAGCGGGGAGAGCA
GTGTCCTCCACGTGGGGCCCAGTCCAGGAAGCCCCTTTGTAACCGTGTGTCGTGGTGCTT
TATTGTACACCCAGTGGCGTTCTTTTTACTATAATGTTCCTTTTATTTTCCCTCAAGAAG
AAAAATCATGAATTTGCAGCCGACTTAATTTTGTTTACTTTTTGTCTTAATGATGGATTT
GAAAATGAAAGATTTAAAAGGCAGAACAGAATCTGTTGTCCTTAATTATATTTGCAATTT
GGAATTTGTGTGAATTGATTTAGTAAAATGTTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAATGCTGACATTGACCTTAAAGATGACCTAGGAAACACGCTGGAGAAGAAGGGTGGC
AAGGAGTTTGTGGAAGCTGTTCTGGAACTCCGGAAAAAGAACGGGCCCTTGGAAGTAGCC
GGAGCTGCTGTCAGTGCGGGCCATGGCCTGCCCGCCAAGTTTGTGATCCACTGTAACAGT
CCCGTGTGGGGTGCAGACAAGTGTGAGGAGCTTCTGGAAAAGACAGTGAAGAACTGCTTG
GCCCTGGCAGACGATAAGAAGCTCAAGTCCATCGCCTTTCCATCCATCGGCAGCGGCAGG
AACGGTTTTCCGAAGCAGACGGCAGCTCAGCTGATCCTGAGGGCCATCTCCAGCTACTTC
GTGTCAACCATGTCCTCTTCCATCAAAACGGTGTATTTTGTGCTGTTTGACAGCGAGAGT
ATAGGCATCTACGTGCAGGAAATGGCCAAGCTGGACGCCAACTAGGCTGAGGAACTGCAG
AACCAGCCCGCACCATGCCCCCGCCTCCAACTTGAAAGAAAGCAAGAAAATAATCCCCTC
CGCTCCTCGGGGGAGGCGGGAACCCTTTCATTTTCAGTTTTTGCTCATCTAGGGAAAATG
AGGTTTTGGTTTCCAGTTTAATTGTTTTTGACCTTCTAAAATGTTTTTCCGTTAGCACTG
ATAGTTGACATTACTGTTAAGCACTGTGTTCCAGACCGTGTCTGATTTTAGTGTAACCTA
GGAGATTTTATAGTTTTATTTTAATGAAATCCTGCTTGACGCAGAGCAGCGGGGAGAGCA
GTGTCCTCCACGTGGGGCCCAGTCCAGGAAGCCCCTTTGTAACCGTGTGTCGTGGTGCTT
TATTGTACACCCAGTGGCGTTCTTTTTACTATAATGTTCCTTTTATTTTCCCTCAAGAAG
AAAAATCATGAATTTGCAGCCGACTTAATTTTGTTTACTTTTTGTCTTAATGATGGATTT
GAAAATGAAAGATTTAAAAGGCAGAACAGAATCTGTTGTCCTTAATTATATTTGCAATTT
GGAATTTGTGTGAATTGATTTAGTAAAATGTTAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62088560|dbj|BAD92727.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62088560|dbj|BAD92727.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               297-465, gnl|bosTau2|chr28 (19459782-19459614)
               

               
               297-465, gnl|Hg17|chr10 (71541277-71541445)
               

               
               297-465, gnl|Mm7|chr10 (61257923-61257755)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               297-465, gnl|bosTau2|chr28 (19459782-19459614)
               

               
               297-465, gnl|Hg17|chr10 (71541277-71541445)
               

               
               297-465, gnl|Mm7|chr10 (61257923-61257755)

Expressed library(ies): 50 entry(ies)

More info

Expressed library(ies): 50 entry(ies)

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               sto (1.97806)
               

               
               che (1.49945)
               

               
               cje (0.991408)
               

               
               ova (0.774793)
               

               
               hlv (0.696282)
               

               
               rec (0.692281)
               

               
               mgp (0.692042)
               

               
               cut (0.679694)
               

               
               cki (0.660939)
               

               
               mga (0.64082)
               

               
               spl (0.572738)
               

               
               fty (0.527519)
               

               
               cbe (0.478469)
               

               
               pty (0.428143)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               ebs (0.354904)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               ldo (0.291008)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               med (0.232504)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 50 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (1.97806)
               

               
               che (1.49945)
               

               
               cje (0.991408)
               

               
               ova (0.774793)
               

               
               hlv (0.696282)
               

               
               rec (0.692281)
               

               
               mgp (0.692042)
               

               
               cut (0.679694)
               

               
               cki (0.660939)
               

               
               mga (0.64082)
               

               
               spl (0.572738)
               

               
               fty (0.527519)
               

               
               cbe (0.478469)
               

               
               pty (0.428143)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               ebs (0.354904)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               ldo (0.291008)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               med (0.232504)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	297-465, gnl\|bosTau2\|chr28 (19459782-19459614)
	297-465, gnl\|Hg17\|chr10 (71541277-71541445)
	297-465, gnl\|Mm7\|chr10 (61257923-61257755)

	sto (1.97806)
	che (1.49945)
	cje (0.991408)
	ova (0.774793)
	hlv (0.696282)
	rec (0.692281)
	mgp (0.692042)
	cut (0.679694)
	cki (0.660939)
	mga (0.64082)
	spl (0.572738)
	fty (0.527519)
	cbe (0.478469)
	pty (0.428143)
	elu (0.385356)
	sug (0.381874)
	cmu (0.372787)
	ebs (0.354904)
	vin (0.332557)
	fco (0.314416)
	ldo (0.291008)
	csk (0.281492)
	fce (0.271592)
	pla (0.267344)
	lyg (0.266205)
	kid (0.259471)
	thg (0.253582)
	bla (0.248694)
	med (0.232504)
	eje (0.197668)
	col (0.195008)
	ill (0.175593)
	fbs (0.175346)
	sin (0.174948)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	bfe (0.149858)
	hyp (0.142837)
	cst (0.140036)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	ese (0.126502)
	tra (0.123092)
	cly (0.120642)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)
	nbm (0.0993246)