Ss1.1-Mixc-0026f08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGCATGTCAGCATGTTGCAGCCTCAAAAGAAAAAGAAGACAGCAGTGGCCCTAAGAGA CTGCATCGAGCTCTTCACTACCATGGAGACCCTTGGGGAGCACGACCCCTGGTACTGTCC CAACTGTAAGAAGCATCAACAGGCCACAAAGAAGTTTGACTTGTGGTCCTTGCCGAAGAT CCTGGTTGTCCATCTCAAACGTTTCTCCTACAATAGATACTGGAGGGATAAGCTTGATAC GGTTGTGGAATTCCCAGTCAGAGCTCTGAACATGTCCGAGTTTGTCTGTGACCTGTCAGC AAGGCCTTATGTGTACGACCTCATTGCCGTGTCCAATCATTACGGAGCCATGGGGGTTGG CCACTATACTGCATACGCGAAGAACAAACTGAATGGGAAATGGTATTACTTTGATGATAG CAATGTGTCCCTGGCCTCTGAGGATCAGATAGTGACAAAAGCAGCTTACGTGCTATTTTA CCAGCGTCGAGATGATGAGTTTTATAAGGCACCTTCACTCAGTTTTCCTGGATCGTCTGA TGGAGGAACGAGACCAGGAAGCTCACAGCAAGGCATGGGGGATGATGAGACTTGCAGCAT GGACACCAACTGATGTTGCTTCATGACCCTGCACCACAGCACCAGTGTAATCCCCCAGGA GAACACCTTTGACACTGAAGACTGCTAGTGTTTCCTCTAAAAACCAGATGAGGAAATTTC CTTCTCTTATGAACAGAAGGAAAAAAAAGACCGTTTTTGCTCAGAAGGGTTATACCAAGA GGCTGAATTATTTTTCTTTCTATATAGGTGGCGAGAAATTTCTGTAAGCCTTTGGAGCTG CAGAGTGGGGGTTGGGGGTGTAGCACAATGGAGTATATCTGATGGATTCCAAAGAACAGA GAGGAACACACTGTAATTGAGTTTGGTGCAGCCATGAAGACCTGCCACGAGCTGCCCTGA GTTCTTGGATTTCTAATTCTGGTGCTGATTACTGGTCCCCCCAGTAGTCTGCCTGCAGTA AACTAAGCCTCGAGTAAACTTGATGTCATCCCCTTCTCCCTTACTGTGCACTGAGATGGG TTTATCATTCTCTAAAAATTAGCCACTGAGATGCATTTTTGTATCCCTTTGAGTCATGGA ATTTCCAGCTTTCTTCTCCCTAATGAAATGAAGATATTTGGTATTAGGGTTTCCTGCCCC TTAATCGCCTATGGAACCTTGTACTTGTGTCATGTCTCCCAGCATCCTTGATGAATTGAG GCAGTGTGATACCCTGTGACATTTTTATTAGATATCACTTAGAAGTCAGTATGTGAAACT GCTGGGTACTGTGTCCCATACAGTACCTTTGGTGGGTTGAGAAGAGAAACTTTTCCCGGC GTTGACTTCGGTTAGAACCAGCCAGTTCTCTCCACCCCTGCCCCACCACGCTCCCATGAC CCATTTCATCGCGGTGAGGAACCCGTTGTTCACTCGTCACTGGGGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGCATGTCAGCATGTTGCAGCCTCAAAAGAAAAAGAAGACAGCAGTGGCCCTAAGAGA CTGCATCGAGCTCTTCACTACCATGGAGACCCTTGGGGAGCACGACCCCTGGTACTGTCC CAACTGTAAGAAGCATCAACAGGCCACAAAGAAGTTTGACTTGTGGTCCTTGCCGAAGAT CCTGGTTGTCCATCTCAAACGTTTCTCCTACAATAGATACTGGAGGGATAAGCTTGATAC GGTTGTGGAATTCCCAGTCAGAGCTCTGAACATGTCCGAGTTTGTCTGTGACCTGTCAGC AAGGCCTTATGTGTACGACCTCATTGCCGTGTCCAATCATTACGGAGCCATGGGGGTTGG CCACTATACTGCATACGCGAAGAACAAACTGAATGGGAAATGGTATTACTTTGATGATAG CAATGTGTCCCTGGCCTCTGAGGATCAGATAGTGACAAAAGCAGCTTACGTGCTATTTTA CCAGCGTCGAGATGATGAGTTTTATAAGGCACCTTCACTCAGTTTTCCTGGATCGTCTGA TGGAGGAACGAGACCAGGAAGCTCACAGCAAGGCATGGGGGATGATGAGACTTGCAGCAT GGACACCAACTGATGTTGCTTCATGACCCTGCACCACAGCACCAGTGTAATCCCCCAGGA GAACACCTTTGACACTGAAGACTGCTAGTGTTTCCTCTAAAAACCAGATGAGGAAATTTC CTTCTCTTATGAACAGAAGGAAAAAAAAGACCGTTTTTGCTCAGAAGGGTTATACCAAGA GGCTGAATTATTTTTCTTTCTATATAGGTGGCGAGAAATTTCTGTAAGCCTTTGGAGCTG CAGAGTGGGGGTTGGGGGTGTAGCACAATGGAGTATATCTGATGGATTCCAAAGAACAGA GAGGAACACACTGTAATTGAGTTTGGTGCAGCCATGAAGACCTGCCACGAGCTGCCCTGA GTTCTTGGATTTCTAATTCTGGTGCTGATTACTGGTCCCCCCAGTAGTCTGCCTGCAGTA AACTAAGCCTCGAGTAAACTTGATGTCATCCCCTTCTCCCTTACTGTGCACTGAGATGGG TTTATCATTCTCTAAAAATTAGCCACTGAGATGCATTTTTGTATCCCTTTGAGTCATGGA ATTTCCAGCTTTCTTCTCCCTAATGAAATGAAGATATTTGGTATTAGGGTTTCCTGCCCC TTAATCGCCTATGGAACCTTGTACTTGTGTCATGTCTCCCAGCATCCTTGATGAATTGAG GCAGTGTGATACCCTGTGACATTTTTATTAGATATCACTTAGAAGTCAGTATGTGAAACT GCTGGGTACTGTGTCCCATACAGTACCTTTGGTGGGTTGAGAAGAGAAACTTTTCCCGGC GTTGACTTCGGTTAGAACCAGCCAGTTCTCTCCACCCCTGCCCCACCACGCTCCCATGAC CCATTTCATCGCGGTGAGGAACCCGTTGTTCACTCGTCACTGGGGCCC |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 111-261, gnl|bosTau2|chr22 (37755558-37755408) | |
| 111-261, gnl|canFam2|chr20 (42946819-42946645) | |
| 111-261, gnl|danRer3|chr6 (25329773-25329937) | |
| 111-261, gnl|dasNov1|scaffold_220552 (2777-2938) | |
| 111-261, gnl|echTel1|scaffold_287447 (10154-10330) | |
| 111-261, gnl|fr1|chrUn (191068049-191067885) | |
| 111-261, gnl|galGal2|chr12 (2490723-2490888) | |
| 111-261, gnl|hg17|chr3 (49296418-49296587) | |
| 111-261, gnl|Hg17|chr3 (49296574-49296424) | |
| 111-261, gnl|loxAfr1|scaffold_10905 (53503-53672) | |
| 111-261, gnl|mm7|chr9 (108118561-108118393) | |
| 111-261, gnl|Mm7|chr9 (108118404-108118554) | |
| 111-261, gnl|monDom2|scaffold_5 (75984900-75984732) | |
| 111-261, gnl|oryCun1|scaffold_186837 (331-162) | |
| 111-261, gnl|panTro1|chr2 (50819791-50819960) | |
| 111-261, gnl|rheMac2|chr2 (87164673-87164504) | |
| 111-261, gnl|rn3|chr16_random (1111125-1110957) | |
| 111-261, gnl|tetNig1|chr11 (6194281-6194448) | |
| 111-261, gnl|xenTro1|scaffold_193 (1011914-1011753) | |
| 454-1385, gnl|bosTau2|chr22 (37751380-37750472) | |
| 454-1385, gnl|Hg17|chr3 (49290889-49289921) | |
| 454-1385, gnl|Mm7|chr9 (108125092-108126014) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-261, gnl|bosTau2|chr22 (37755558-37755408) | |
| 111-261, gnl|canFam2|chr20 (42946819-42946645) | |
| 111-261, gnl|danRer3|chr6 (25329773-25329937) | |
| 111-261, gnl|dasNov1|scaffold_220552 (2777-2938) | |
| 111-261, gnl|echTel1|scaffold_287447 (10154-10330) | |
| 111-261, gnl|fr1|chrUn (191068049-191067885) | |
| 111-261, gnl|galGal2|chr12 (2490723-2490888) | |
| 111-261, gnl|hg17|chr3 (49296418-49296587) | |
| 111-261, gnl|Hg17|chr3 (49296574-49296424) | |
| 111-261, gnl|loxAfr1|scaffold_10905 (53503-53672) | |
| 111-261, gnl|mm7|chr9 (108118561-108118393) | |
| 111-261, gnl|Mm7|chr9 (108118404-108118554) | |
| 111-261, gnl|monDom2|scaffold_5 (75984900-75984732) | |
| 111-261, gnl|oryCun1|scaffold_186837 (331-162) | |
| 111-261, gnl|panTro1|chr2 (50819791-50819960) | |
| 111-261, gnl|rheMac2|chr2 (87164673-87164504) | |
| 111-261, gnl|rn3|chr16_random (1111125-1110957) | |
| 111-261, gnl|tetNig1|chr11 (6194281-6194448) | |
| 111-261, gnl|xenTro1|scaffold_193 (1011914-1011753) | |
| 454-1385, gnl|bosTau2|chr22 (37751380-37750472) | |
| 454-1385, gnl|Hg17|chr3 (49290889-49289921) | |
| 454-1385, gnl|Mm7|chr9 (108125092-108126014) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| elu (0.385356) | |
| sto (0.359648) | |
| cmu (0.186393) | |
| duo (0.172801) | |
| cut (0.169924) | |
| cki (0.165235) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| kid (0.129735) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| sto (0.359648) | |
| cmu (0.186393) | |
| duo (0.172801) | |
| cut (0.169924) | |
| cki (0.165235) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| kid (0.129735) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| jej (0.0989218) |