Ss1.1-Mixc-0026g05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCCCGGGCCGAGCGGCGAGTGTGCTCCGGTGCCAGACCCATCGCCAGACGTCCCTGGG CCGCTTGACTCCGGAGTCCCGCTCCTGAACCCTGCGTCCTCAAAGATTAATGTGAGGAGA GTGGAAAGCATCTCAGCTCAGCTGGAGGAGGCGAGCTCCACAGGCGGTTTCCTCTACACT GAGAACAGTACCAAGCGCAGCATTAAAGAGCGGCTCATGAAGCTCTTGCCCTGCTCAGCT GCCAAAACGTCGTCTCCTGCTGTTCAAAAAAGATGAACTGGAGATGGCCACTGTCAGGCA TCGGCCTGAGGCTCTTGAGCTTCTGGAAGCCCAGAGCAAATTTACCAAGAAGGAGCTCCA GATTCTTTACAGAGGATTTAAGAATGAATGCCCCAGTGGCGTTGTTAATGAAGAGACCTT CAAAGAGATTTACTCGCAGTTCTTTCCACAGGGAGATTCTACAACATATGCACATTTTCT GTTCAATGCATTTGATACGGATCACAATGGAGCTGTGAGTTTTGAGGATTTCATCAAGGG TCTTTCTATTTTGCTTCGGGGGACAGTACAAGAAAAACTCAACTGGGCATTTAATTTGTA TGACATAAATAAAGACGGCTACATCACTAAAGAAGAAATGCTTGACATAATGAAAGCAAT ATATGACATGATGGGTAAATGCACATACCCTGTCCTCAAGGAAGATGCTCCCAGACAACA CGTTGAGACATTTTTCCAGAAAATGGACAAAAATAAAGACGGAGTCGTTACCATAGATGA ATTCATCGAGAGTTGCCAAAAAGATGAAAACATCATGCGCTCCATGCAGCTCTTTGAAAA TGTGATTTAACTTGTCAAACACATCCTCAATCAAACAGACAGATGTGAACTATTCTACCA CAGAGTTGGAGCTACCACTTTTAGCATAGATTGCTCAGCTTTACACTGAGGCATATTATG CAAACATGCTTTGTTTTAATATAAAGCAATCCCCCAAAAGATTGGAGTTTCCCATTTATA AATTTGCATCCTTTTCATAATGCTACGGAGTTCATGGGATGTTCTGAGTCATTTCATACC CTGTGACTATTCAAAAGTAACAGAATCTGGCATATAGTTTTATTGATTCTTTAGCCATGG GATTATTGAGGCTTTCACATTATCAGTGATTCTAAAATATCAGTGTTTTTTGCTACTCAT TTGTATGTATTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCCCGGGCCGAGCGGCGAGTGTGCTCCGGTGCCAGACCCATCGCCAGACGTCCCTGGG CCGCTTGACTCCGGAGTCCCGCTCCTGAACCCTGCGTCCTCAAAGATTAATGTGAGGAGA GTGGAAAGCATCTCAGCTCAGCTGGAGGAGGCGAGCTCCACAGGCGGTTTCCTCTACACT GAGAACAGTACCAAGCGCAGCATTAAAGAGCGGCTCATGAAGCTCTTGCCCTGCTCAGCT GCCAAAACGTCGTCTCCTGCTGTTCAAAAAAGATGAACTGGAGATGGCCACTGTCAGGCA TCGGCCTGAGGCTCTTGAGCTTCTGGAAGCCCAGAGCAAATTTACCAAGAAGGAGCTCCA GATTCTTTACAGAGGATTTAAGAATGAATGCCCCAGTGGCGTTGTTAATGAAGAGACCTT CAAAGAGATTTACTCGCAGTTCTTTCCACAGGGAGATTCTACAACATATGCACATTTTCT GTTCAATGCATTTGATACGGATCACAATGGAGCTGTGAGTTTTGAGGATTTCATCAAGGG TCTTTCTATTTTGCTTCGGGGGACAGTACAAGAAAAACTCAACTGGGCATTTAATTTGTA TGACATAAATAAAGACGGCTACATCACTAAAGAAGAAATGCTTGACATAATGAAAGCAAT ATATGACATGATGGGTAAATGCACATACCCTGTCCTCAAGGAAGATGCTCCCAGACAACA CGTTGAGACATTTTTCCAGAAAATGGACAAAAATAAAGACGGAGTCGTTACCATAGATGA ATTCATCGAGAGTTGCCAAAAAGATGAAAACATCATGCGCTCCATGCAGCTCTTTGAAAA TGTGATTTAACTTGTCAAACACATCCTCAATCAAACAGACAGATGTGAACTATTCTACCA CAGAGTTGGAGCTACCACTTTTAGCATAGATTGCTCAGCTTTACACTGAGGCATATTATG CAAACATGCTTTGTTTTAATATAAAGCAATCCCCCAAAAGATTGGAGTTTCCCATTTATA AATTTGCATCCTTTTCATAATGCTACGGAGTTCATGGGATGTTCTGAGTCATTTCATACC CTGTGACTATTCAAAAGTAACAGAATCTGGCATATAGTTTTATTGATTCTTTAGCCATGG GATTATTGAGGCTTTCACATTATCAGTGATTCTAAAATATCAGTGTTTTTTGCTACTCAT TTGTATGTATTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 270-386, + strand, RNAz p=0.943333 | |
| 882-1031, - strand, RNAz p=0.788326 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 270-386, + strand, RNAz p=0.943333 | |
| 882-1031, - strand, RNAz p=0.788326 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_147182, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 166-268, gnl|bosTau2|chr6 (17730007-17730109) | |
| 166-268, gnl|canFam2|chr3 (91580500-91580111) | |
| 166-268, gnl|echTel1|scaffold_268464 (1364-1812) | |
| 166-268, gnl|galGal2|chr4 (75244128-75243744) | |
| 166-268, gnl|hg17|chr4 (20560379-20560756) | |
| 166-268, gnl|Hg17|chr4 (20560602-20560500) | |
| 166-268, gnl|loxAfr1|scaffold_1542 (122724-122337) | |
| 166-268, gnl|mm7|chr5 (47835348-47835725) | |
| 166-268, gnl|Mm7|chr5 (47835574-47835472) | |
| 166-268, gnl|monDom2|scaffold_10 (18368667-18368294) | |
| 166-268, gnl|oryCun1|scaffold_175362 (8825-8442) | |
| 166-268, gnl|panTro1|chr3_random (34529264-34528881) | |
| 166-268, gnl|rheMac2|chr5 (15670460-15670848) | |
| 166-268, gnl|rn3|chr14 (67288119-67287734) | |
| 270-386, gnl|bosTau2|chr6 (17754424-17754540) | |
| 270-386, gnl|canFam2|chr3 (91606904-91606728) | |
| 270-386, gnl|danRer3|chr10 (11943364-11943548) | |
| 270-386, gnl|dasNov1|scaffold_141045 (73-207) | |
| 270-386, gnl|echTel1|scaffold_324595 (3527-3703) | |
| 270-386, gnl|fr1|chrUn (144832411-144832561) | |
| 270-386, gnl|galGal2|chr4 (75250574-75250401) | |
| 270-386, gnl|hg17|chr4 (20528407-20528583) | |
| 270-386, gnl|Hg17|chr4 (20528550-20528434) | |
| 270-386, gnl|loxAfr1|scaffold_78028 (4-167) | |
| 270-386, gnl|mm7|chr5 (47808316-47808492) | |
| 270-386, gnl|Mm7|chr5 (47808459-47808343) | |
| 270-386, gnl|monDom2|scaffold_10 (18387881-18387705) | |
| 270-386, gnl|oryCun1|scaffold_175362 (36711-36536) | |
| 270-386, gnl|panTro1|chr3_random (34561431-34561255) | |
| 270-386, gnl|rheMac2|chr5 (15640296-15640472) | |
| 270-386, gnl|rn3|chr14 (67326174-67325998) | |
| 270-386, gnl|tetNig1|chr7 (6636154-6635994) | |
| 270-386, gnl|xenTro1|scaffold_54 (1867969-1867788) | |
| 635-765, gnl|bosTau2|chr6 (17853893-17854021) | |
| 635-765, gnl|Hg17|chr4 (20410677-20410542) | |
| 635-765, gnl|Mm7|chr5 (47722633-47722501) | |
| 803-1212, gnl|bosTau2|chr6 (17856185-17856591) | |
| 803-1212, gnl|Hg17|chr4 (20408021-20407611) | |
| 803-1212, gnl|Mm7|chr5 (47716834-47716449) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 166-268, gnl|bosTau2|chr6 (17730007-17730109) | |
| 166-268, gnl|canFam2|chr3 (91580500-91580111) | |
| 166-268, gnl|echTel1|scaffold_268464 (1364-1812) | |
| 166-268, gnl|galGal2|chr4 (75244128-75243744) | |
| 166-268, gnl|hg17|chr4 (20560379-20560756) | |
| 166-268, gnl|Hg17|chr4 (20560602-20560500) | |
| 166-268, gnl|loxAfr1|scaffold_1542 (122724-122337) | |
| 166-268, gnl|mm7|chr5 (47835348-47835725) | |
| 166-268, gnl|Mm7|chr5 (47835574-47835472) | |
| 166-268, gnl|monDom2|scaffold_10 (18368667-18368294) | |
| 166-268, gnl|oryCun1|scaffold_175362 (8825-8442) | |
| 166-268, gnl|panTro1|chr3_random (34529264-34528881) | |
| 166-268, gnl|rheMac2|chr5 (15670460-15670848) | |
| 166-268, gnl|rn3|chr14 (67288119-67287734) | |
| 270-386, gnl|bosTau2|chr6 (17754424-17754540) | |
| 270-386, gnl|canFam2|chr3 (91606904-91606728) | |
| 270-386, gnl|danRer3|chr10 (11943364-11943548) | |
| 270-386, gnl|dasNov1|scaffold_141045 (73-207) | |
| 270-386, gnl|echTel1|scaffold_324595 (3527-3703) | |
| 270-386, gnl|fr1|chrUn (144832411-144832561) | |
| 270-386, gnl|galGal2|chr4 (75250574-75250401) | |
| 270-386, gnl|hg17|chr4 (20528407-20528583) | |
| 270-386, gnl|Hg17|chr4 (20528550-20528434) | |
| 270-386, gnl|loxAfr1|scaffold_78028 (4-167) | |
| 270-386, gnl|mm7|chr5 (47808316-47808492) | |
| 270-386, gnl|Mm7|chr5 (47808459-47808343) | |
| 270-386, gnl|monDom2|scaffold_10 (18387881-18387705) | |
| 270-386, gnl|oryCun1|scaffold_175362 (36711-36536) | |
| 270-386, gnl|panTro1|chr3_random (34561431-34561255) | |
| 270-386, gnl|rheMac2|chr5 (15640296-15640472) | |
| 270-386, gnl|rn3|chr14 (67326174-67325998) | |
| 270-386, gnl|tetNig1|chr7 (6636154-6635994) | |
| 270-386, gnl|xenTro1|scaffold_54 (1867969-1867788) | |
| 635-765, gnl|bosTau2|chr6 (17853893-17854021) | |
| 635-765, gnl|Hg17|chr4 (20410677-20410542) | |
| 635-765, gnl|Mm7|chr5 (47722633-47722501) | |
| 803-1212, gnl|bosTau2|chr6 (17856185-17856591) | |
| 803-1212, gnl|Hg17|chr4 (20408021-20407611) | |
| 803-1212, gnl|Mm7|chr5 (47716834-47716449) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |