Non-Coding RNA Search

Ss1.1-Mixc-0026g11.3

Sequence:


               
               TTCTGGGCATAGATGAAGGAGACAGCCCACCTCACCATCACCCTGCAGTGTGACACTTTT
TGGTTGTCACCAGCCACTCAGAAGTGGCAGTATTCCTGAGACCTCACGGTGGCTCTCCAG
GGAAGCCACTCCTGCCTGGGGCTCCCCATGGGAGAGGGTGGCCTGTTGGCGTGACTTACC
CGCCCAGGTGGGGCCCCCGCTACTGGAGAGCTGGCCAAGAAGCAAGTTCAGCTAGGTGTT
AGTCCCATACTTAGTGGATTCCACCAGTACAGACCCAGGGAAGAGCTGGCCCATAGATGT
GTGGCTTGGGAAAGTTCTGCTGTCAGGAGGCCTGGCAAGATTTCATTCCTCAGAAAATTT
TTATATCTGGAGGTCTGTTGGTTATTGTACTTCACCCTTTTAAGATGCTGCCTCTTTGTT
CTTTTCCTTCTCTCTCTCCTGTCCCACTGTGTCTTGGTCTGTATTCCCTGAGGCTTATCA
CCAGCTGGGAGGTGCAGGGCGTGTCCCCTCCAGAGGCCGCTGCCCCTGCCATGTGGTTAC
CCACCTTGAGGGGAAACCCTGGAAAAATTCTCTGCTTTAAATGTGGCCTTCGATTCCTGC
GTTTGCCCCTCAGGAGTATGGGTCTTTAAACATACTTTTAAAAACAAACAAAAAAATCTG
TAACTTGGTGCTTGTTGATGAATTGCAAGCTGGCCTTGCAGATGGAGATATTTATCTCTC
AGTTTATTTGAAAGAGGTCTGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGGGCATAGATGAAGGAGACAGCCCACCTCACCATCACCCTGCAGTGTGACACTTTT
TGGTTGTCACCAGCCACTCAGAAGTGGCAGTATTCCTGAGACCTCACGGTGGCTCTCCAG
GGAAGCCACTCCTGCCTGGGGCTCCCCATGGGAGAGGGTGGCCTGTTGGCGTGACTTACC
CGCCCAGGTGGGGCCCCCGCTACTGGAGAGCTGGCCAAGAAGCAAGTTCAGCTAGGTGTT
AGTCCCATACTTAGTGGATTCCACCAGTACAGACCCAGGGAAGAGCTGGCCCATAGATGT
GTGGCTTGGGAAAGTTCTGCTGTCAGGAGGCCTGGCAAGATTTCATTCCTCAGAAAATTT
TTATATCTGGAGGTCTGTTGGTTATTGTACTTCACCCTTTTAAGATGCTGCCTCTTTGTT
CTTTTCCTTCTCTCTCTCCTGTCCCACTGTGTCTTGGTCTGTATTCCCTGAGGCTTATCA
CCAGCTGGGAGGTGCAGGGCGTGTCCCCTCCAGAGGCCGCTGCCCCTGCCATGTGGTTAC
CCACCTTGAGGGGAAACCCTGGAAAAATTCTCTGCTTTAAATGTGGCCTTCGATTCCTGC
GTTTGCCCCTCAGGAGTATGGGTCTTTAAACATACTTTTAAAAACAAACAAAAAAATCTG
TAACTTGGTGCTTGTTGATGAATTGCAAGCTGGCCTTGCAGATGGAGATATTTATCTCTC
AGTTTATTTGAAAGAGGTCTGGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               626-744, - strand, RNAz p=0.59876

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               626-744, - strand, RNAz p=0.59876

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               266-744, gnl|bosTau2|chr21 (9838401-9838889)
               

               
               266-744, gnl|Hg17|chr15 (84090011-84090494)
               

               
               266-744, gnl|Mm7|chr7 (71603583-71604023)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               266-744, gnl|bosTau2|chr21 (9838401-9838889)
               

               
               266-744, gnl|Hg17|chr15 (84090011-84090494)
               

               
               266-744, gnl|Mm7|chr7 (71603583-71604023)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	266-744, gnl\|bosTau2\|chr21 (9838401-9838889)
	266-744, gnl\|Hg17\|chr15 (84090011-84090494)
	266-744, gnl\|Mm7\|chr7 (71603583-71604023)