Non-Coding RNA Search

Ss1.1-Mixc-0026h18.3

Sequence:


               
               GTGAAACTATAGGCACGTGGTTATGTTGGGAGCTGGGGCTTGGTGTAGACCATGGACCAA
AAGAGTTTCTTACAGTTGGAAGGGCCTTTGGTGCCCTCTCACACCTGTTGGATGCTGGGG
GAGTAGCAATAAACCTCAGCCCCCTGGCCTCCACTTCCCCTTCAGTCTGGGGTACAAGTA
AGAAGCCTGAATTCTATGATATTAGCTTTCTAATTCTTATTTATTTATATATTCTGAGGC
AGCTCAGCAGGAGTGTGTGTGCGAATGTGTGTACACTTAGGTGTGCGTGTGTATGTGCCG
TGGGGTAGGGGTGTCATTATATACAAACCTAAAATACTGTCCCAAAATACAAGCCACGAG
TCATTTCAGTGGACTCACACGCAACCCTGCCTCCCATAGTACCTCCCCTAATCTTGTTTC
TGTGCCAGGCCTGGATGGGAGGAGCCCTAGGCCGGGCTGGGATGAGAGTCCCACAGTCTA
GGGAGATGGAGGTCACCTGACGAGGTCCACCTCTTCCCCTTCTCTCAAGAAGCACAGGCC
TCCTCTTGAGTGAGAGGCTCTATCCACTATAGCACAGGCAGGATCAGCATAGCAGCCCTC
CCACCCCCAACCTGTCCCTCACAGGTGGGGAAGCAGGGGAGGGAAAGGGACCAGGCATAT
GGTCAAACCAGCAGATCAAAAAGCACAAGGAGCTGGGGCAGGGGCAGGAAACGGGGGCCT
TCCCAGCAATTCCTCTAAAGTGGGAAGAGGTTAGGCAGTAAGCCAGGGACCCCTAATGCA
GGGACCAGAAGCCTCAGTTTCCCCATTTCACCCTTTCCACAGGATAAGCCCCTGAGGGTT
AAGCTGCCCCTGCCCCACCCTACTCCATGTGGCTGCTTTCTTTGGTGCCCCTTTCCCCCC
ACTGTAGCTGTGATGTGTTGTAGTTTTTAGCTGTTTGTAAATGTTTAAAAAAAAAGTTAA
AAGGAAAAAAGTGAAAACAACAACTACAAAAGAAAATCCAAATTCCCCCTCCTCATGCTG
CGTCTGGTGTCCCCACCCTGTGGTCACTCCCATTTTGTAACACTGAACCAGGTGGTGACT
GTTTAACTCTTTGGTGTCTGTGCTCAAAGGACTGCCTTCTCCTCCAGTGCCCAGTGTACG
AGTGTGTGCCCTCTTTCCTCACCCTTCACTTACTGGACGCAGCTCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAACTATAGGCACGTGGTTATGTTGGGAGCTGGGGCTTGGTGTAGACCATGGACCAA
AAGAGTTTCTTACAGTTGGAAGGGCCTTTGGTGCCCTCTCACACCTGTTGGATGCTGGGG
GAGTAGCAATAAACCTCAGCCCCCTGGCCTCCACTTCCCCTTCAGTCTGGGGTACAAGTA
AGAAGCCTGAATTCTATGATATTAGCTTTCTAATTCTTATTTATTTATATATTCTGAGGC
AGCTCAGCAGGAGTGTGTGTGCGAATGTGTGTACACTTAGGTGTGCGTGTGTATGTGCCG
TGGGGTAGGGGTGTCATTATATACAAACCTAAAATACTGTCCCAAAATACAAGCCACGAG
TCATTTCAGTGGACTCACACGCAACCCTGCCTCCCATAGTACCTCCCCTAATCTTGTTTC
TGTGCCAGGCCTGGATGGGAGGAGCCCTAGGCCGGGCTGGGATGAGAGTCCCACAGTCTA
GGGAGATGGAGGTCACCTGACGAGGTCCACCTCTTCCCCTTCTCTCAAGAAGCACAGGCC
TCCTCTTGAGTGAGAGGCTCTATCCACTATAGCACAGGCAGGATCAGCATAGCAGCCCTC
CCACCCCCAACCTGTCCCTCACAGGTGGGGAAGCAGGGGAGGGAAAGGGACCAGGCATAT
GGTCAAACCAGCAGATCAAAAAGCACAAGGAGCTGGGGCAGGGGCAGGAAACGGGGGCCT
TCCCAGCAATTCCTCTAAAGTGGGAAGAGGTTAGGCAGTAAGCCAGGGACCCCTAATGCA
GGGACCAGAAGCCTCAGTTTCCCCATTTCACCCTTTCCACAGGATAAGCCCCTGAGGGTT
AAGCTGCCCCTGCCCCACCCTACTCCATGTGGCTGCTTTCTTTGGTGCCCCTTTCCCCCC
ACTGTAGCTGTGATGTGTTGTAGTTTTTAGCTGTTTGTAAATGTTTAAAAAAAAAGTTAA
AAGGAAAAAAGTGAAAACAACAACTACAAAAGAAAATCCAAATTCCCCCTCCTCATGCTG
CGTCTGGTGTCCCCACCCTGTGGTCACTCCCATTTTGTAACACTGAACCAGGTGGTGACT
GTTTAACTCTTTGGTGTCTGTGCTCAAAGGACTGCCTTCTCCTCCAGTGCCCAGTGTACG
AGTGTGTGCCCTCTTTCCTCACCCTTCACTTACTGGACGCAGCTCTCT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               81-193, - strand, RNAz p=0.655162
               

               
               534-650, - strand, RNAz p=0.996801
               

               
               689-808, - strand, RNAz p=0.816135

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-193, - strand, RNAz p=0.655162
               

               
               534-650, - strand, RNAz p=0.996801
               

               
               689-808, - strand, RNAz p=0.816135

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               604-689, - strand, RNAmicro p=0.995204
               

               
               624-674, + strand, RNAmicro p=0.958602

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               604-689, - strand, RNAmicro p=0.995204
               

               
               624-674, + strand, RNAmicro p=0.958602

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1188, gnl|bosTau2|chr3 (17575749-17576927)
               

               
               3-1188, gnl|Hg17|chr1 (146689267-146688080)
               

               
               3-1188, gnl|Mm7|chr3 (96068220-96069331)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1188, gnl|bosTau2|chr3 (17575749-17576927)
               

               
               3-1188, gnl|Hg17|chr1 (146689267-146688080)
               

               
               3-1188, gnl|Mm7|chr3 (96068220-96069331)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	81-193, - strand, RNAz p=0.655162
	534-650, - strand, RNAz p=0.996801
	689-808, - strand, RNAz p=0.816135

	604-689, - strand, RNAmicro p=0.995204
	624-674, + strand, RNAmicro p=0.958602

	3-1188, gnl\|bosTau2\|chr3 (17575749-17576927)
	3-1188, gnl\|Hg17\|chr1 (146689267-146688080)
	3-1188, gnl\|Mm7\|chr3 (96068220-96069331)

	fce (0.271592)
	ece (0.229305)
	fcc (0.197785)
	hyp (0.142837)
	pgl (0.118483)
	ecc (0.115035)