Ss1.1-Mixc-0026i09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGATGGCAACTACAGGATCACGTGTCACACGGTCATGGAAGTGCTTCGGGAACACAAG GACAGCGTCATGGCCGTGCTGGAAGCCTTCGTCTATGACCCCTTACTGAACTGGAGGCTG ATGGACACAAACACCAAAGGTAACAAGCGATCGCGCACAAGGACGGATTCCTACTCTGCC GGCCAGTCAGTAGAAATTTTGGATGGTGTGGAACTTGGGGAACCAGCCCATAAGAAAACG GGGACCACAGTGCCAGAATCTATTCATTCGTTCATTGGAGATGGTTTGGTGAAACCGGAG GCCCTAAATAAGAAAGCTATTCAGATTATTAACAGGGTTCGAGATAAGCTCACTGGTCGG GACTTTTCTCATGATGAAACCTTGGATGTCCCAACGCAAGTGGAGCTGCTCATCAAACAA GCCACATCCCATGAAAACCTCTGCCAGTGCTACATCGGCTGGTGTCCTTTCTGGTAACCG GAGGCCCAGACATGCCCACAGCCATTCTCGGGAGGCGTTTGTACCTTGGTGTAGGCCTCC ACTCAGCTGAAAGCGCGGCCAGAAAGTTGGGCCCTGTTAAATATTTTGAAATGTAAATGC AACGAACTACTGTATATTCAAAGTTGGTTTACACCAACTTTCTAGCTGCTGTTGAAGAAT ATATTGTCAGAAACACAAGGCTTGATTTGGTTCCCAGGACGGTAAACACAGTCATGCTAC AGAAATCAAGCCGTCGATTCTGGGGAACAGACGATCCATAACGTTAGAGATACGGGTTTG GACCTAACTCCCAGAAGAACTCCGAAGCGTCTGCTGATGGGAGAATGGCCTCGTCACTCC TCTCAACAAGGACACAGCGACTCAGCGCAGTCACGAAGCCTCAGGTCGCGGAGGACACGG ATTAGGATTCAGAACCATAAGGAAGCGGGAGAAGCTGACTTCAGCGCCTTCACCCATCTC ATTACCTCACTGGTTCCGCGGACAGCACCATCGACCTTTGCCAGACGGGCCAGAGCCGGT GGGGAAGGGCCTTCTGCCTCGCCCGTGCTGCTGCGACCACACACGGCCATCTGCCGACCC CAGCCACCAGGAGGGGGGTTCCTTCAGCTCACCGGGCAGATGTGGGGGGCGAGGGGGGCG GTCACAGGGCAGCGGGGCCCACGCTGGCTCTCCCCAGCACGGTTCTGGGGGGTTTTCAGT GAGGTCTGAATGCTCTGTGCTTAGAGCAAGGGCTTGGAATACACAGGAATGCTGTCATGG AGGTGCTGACACAGAGAAGGAAGGTCTAGCACGTGTTGGGAATTAGGAGCAAAAGAAATA TTAAACTAAATGCACAAAGTATAAAGCGTAGCCATGTCTAGACACCATGTTGTATCTGAA TACTTTTTGTGCCAATAAATGACATCAAACTTTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGATGGCAACTACAGGATCACGTGTCACACGGTCATGGAAGTGCTTCGGGAACACAAG GACAGCGTCATGGCCGTGCTGGAAGCCTTCGTCTATGACCCCTTACTGAACTGGAGGCTG ATGGACACAAACACCAAAGGTAACAAGCGATCGCGCACAAGGACGGATTCCTACTCTGCC GGCCAGTCAGTAGAAATTTTGGATGGTGTGGAACTTGGGGAACCAGCCCATAAGAAAACG GGGACCACAGTGCCAGAATCTATTCATTCGTTCATTGGAGATGGTTTGGTGAAACCGGAG GCCCTAAATAAGAAAGCTATTCAGATTATTAACAGGGTTCGAGATAAGCTCACTGGTCGG GACTTTTCTCATGATGAAACCTTGGATGTCCCAACGCAAGTGGAGCTGCTCATCAAACAA GCCACATCCCATGAAAACCTCTGCCAGTGCTACATCGGCTGGTGTCCTTTCTGGTAACCG GAGGCCCAGACATGCCCACAGCCATTCTCGGGAGGCGTTTGTACCTTGGTGTAGGCCTCC ACTCAGCTGAAAGCGCGGCCAGAAAGTTGGGCCCTGTTAAATATTTTGAAATGTAAATGC AACGAACTACTGTATATTCAAAGTTGGTTTACACCAACTTTCTAGCTGCTGTTGAAGAAT ATATTGTCAGAAACACAAGGCTTGATTTGGTTCCCAGGACGGTAAACACAGTCATGCTAC AGAAATCAAGCCGTCGATTCTGGGGAACAGACGATCCATAACGTTAGAGATACGGGTTTG GACCTAACTCCCAGAAGAACTCCGAAGCGTCTGCTGATGGGAGAATGGCCTCGTCACTCC TCTCAACAAGGACACAGCGACTCAGCGCAGTCACGAAGCCTCAGGTCGCGGAGGACACGG ATTAGGATTCAGAACCATAAGGAAGCGGGAGAAGCTGACTTCAGCGCCTTCACCCATCTC ATTACCTCACTGGTTCCGCGGACAGCACCATCGACCTTTGCCAGACGGGCCAGAGCCGGT GGGGAAGGGCCTTCTGCCTCGCCCGTGCTGCTGCGACCACACACGGCCATCTGCCGACCC CAGCCACCAGGAGGGGGGTTCCTTCAGCTCACCGGGCAGATGTGGGGGGCGAGGGGGGCG GTCACAGGGCAGCGGGGCCCACGCTGGCTCTCCCCAGCACGGTTCTGGGGGGTTTTCAGT GAGGTCTGAATGCTCTGTGCTTAGAGCAAGGGCTTGGAATACACAGGAATGCTGTCATGG AGGTGCTGACACAGAGAAGGAAGGTCTAGCACGTGTTGGGAATTAGGAGCAAAAGAAATA TTAAACTAAATGCACAAAGTATAAAGCGTAGCCATGTCTAGACACCATGTTGTATCTGAA TACTTTTTGTGCCAATAAATGACATCAAACTTTTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 620-738, - strand, RNAz p=0.775993 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 620-738, - strand, RNAz p=0.775993 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-127, gnl|bosTau2|chr16 (22171046-22171172) | |
| 1-127, gnl|canFam2|chr2 (87816222-87816051) | |
| 1-127, gnl|danRer3|chr8 (38975135-38975289) | |
| 1-127, gnl|dasNov1|scaffold_50295 (7274-7124) | |
| 1-127, gnl|echTel1|scaffold_318606 (104606-104442) | |
| 1-127, gnl|fr1|chrUn (35356064-35355906) | |
| 1-127, gnl|galGal2|chr21 (3988147-3988319) | |
| 1-127, gnl|hg17|chr1 (11108629-11108804) | |
| 1-127, gnl|Hg17|chr1 (11108767-11108641) | |
| 1-127, gnl|loxAfr1|scaffold_30211 (8289-8463) | |
| 1-127, gnl|mm7|chr4 (147539776-147539613) | |
| 1-127, gnl|Mm7|chr4 (147539639-147539765) | |
| 1-127, gnl|monDom2|scaffold_175 (1101507-1101323) | |
| 1-127, gnl|oryCun1|scaffold_204355 (6858-6683) | |
| 1-127, gnl|panTro1|chr1_random (4130422-4130597) | |
| 1-127, gnl|rheMac2|chr1 (14223086-14223261) | |
| 1-127, gnl|rn3|chr5 (165643743-165643572) | |
| 1-127, gnl|tetNig1|chrUn_random (28040116-28039959) | |
| 1-127, gnl|xenTro1|scaffold_522 (893537-893702) | |
| 461-1416, gnl|bosTau2|chr16 (22204925-22205866) | |
| 461-1416, gnl|Hg17|chr1 (11101824-11100863) | |
| 461-1416, gnl|Mm7|chr4 (147546386-147547220) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-127, gnl|bosTau2|chr16 (22171046-22171172) | |
| 1-127, gnl|canFam2|chr2 (87816222-87816051) | |
| 1-127, gnl|danRer3|chr8 (38975135-38975289) | |
| 1-127, gnl|dasNov1|scaffold_50295 (7274-7124) | |
| 1-127, gnl|echTel1|scaffold_318606 (104606-104442) | |
| 1-127, gnl|fr1|chrUn (35356064-35355906) | |
| 1-127, gnl|galGal2|chr21 (3988147-3988319) | |
| 1-127, gnl|hg17|chr1 (11108629-11108804) | |
| 1-127, gnl|Hg17|chr1 (11108767-11108641) | |
| 1-127, gnl|loxAfr1|scaffold_30211 (8289-8463) | |
| 1-127, gnl|mm7|chr4 (147539776-147539613) | |
| 1-127, gnl|Mm7|chr4 (147539639-147539765) | |
| 1-127, gnl|monDom2|scaffold_175 (1101507-1101323) | |
| 1-127, gnl|oryCun1|scaffold_204355 (6858-6683) | |
| 1-127, gnl|panTro1|chr1_random (4130422-4130597) | |
| 1-127, gnl|rheMac2|chr1 (14223086-14223261) | |
| 1-127, gnl|rn3|chr5 (165643743-165643572) | |
| 1-127, gnl|tetNig1|chrUn_random (28040116-28039959) | |
| 1-127, gnl|xenTro1|scaffold_522 (893537-893702) | |
| 461-1416, gnl|bosTau2|chr16 (22204925-22205866) | |
| 461-1416, gnl|Hg17|chr1 (11101824-11100863) | |
| 461-1416, gnl|Mm7|chr4 (147546386-147547220) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| eye (0.341006) | |
| jca (0.22792) | |
| eli (0.151814) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| eru (0.120048) | |
| clu (0.119646) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.341006) | |
| jca (0.22792) | |
| eli (0.151814) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| eru (0.120048) | |
| clu (0.119646) |