Non-Coding RNA Search

Ss1.1-Mixc-0026j16.3

Sequence:


               
               TGTGGCCAGTGGCATGAGCTGGCTGTGCCCTTTGCACACCCTGAGGACATCAGGAGCTGG
GTGCCGCCCTGTCCCCCAGGACGCCTCAGAGCGCCCTGAGAGCTTTGTGACCTCCCTGTG
CTGGGCGGGCTCCTGCGAGTGAAGCTGTTAGCTCAGTGTAGGGTGCAGTCCTTCCAACGG
TGGCATCAATAAGACTGCCATCGCTTTGTGGCCCTCCGGGACACTGTGGCCGGCTTTTCG
AGACATCTCATTCTTCTGAAGATGAATTCTCAGATGATATGTGAGCCCAAATCACGGGGG
TACCCCCCTCGGCTTGACTTTCTTGTATCACAAAGATCACCCAGTTAAGAAACTTCATAG
GGAGCTGGAGAACAGATCTGTCCCCCGAGGATGGTTTTCTGGTGCAAGTTTCCCAATAAC
AGTAAAGATAATCTCCTTTTTCTTCCCACCCACTCGCGGTGTATAAATCGGCTGTTCCGA
GTTTATGGTGTATATTAGGCAAACACACACACACACACACAGAGTGAAAGTGAAGTCTGT
CGGCCTGGGCGTGGTTCTCCTGCAGAGTTCTCCCAAAGTCAGCTTCTAAGCCTGCGCTAT
TCTGCGGTGACCCCAAAGCACCTTTCAGACGCCTGACCCCCCCCTGTGGCGTGCAGCCCC
CGTGCCCACCGGGACCCGGTCAGCACAGATTTTGATGACTCCCTTTCTAGGGCAGAGTCG
GGGAATCTGGCCCGCTCCGAGGGCCTCTTCATGCTGTGCAGTGATAGGAAGTTATAAGAT
GTCATGATGGACCAGTCCGTGTGAATCCAGTATATACGAGAACACCAGACCCTCCAATCA
ATATAACACCCCCCCCCCCCGTCTGCTTCCTGTATGGTGTTATCATATGTAACATTTACT
CCTGTTTCTGCTGATCTTTTTTAATGTTTGGGGTTTGTTTCTGGCATCCGTTGTAATCAT
TCCTGTGCTGTGTTTTTATGACTCTCAGTAGGGGTTAGACGTGCACCTTCTCTTCCCAAA
GGTTTCTGCCTCGTGGAAGCATCGGACCCAGAGTGGACGCGGCGTGGTCACCAGCCTCGG
ATGGGGACCCCCTCAGACCTTTCCTTCGGTCCCTTGAGTCCCATTGCCTTTCCACCTCCC
ACCTTTTGTTCTTCGGTTCCAATTATTACGAAGCGAAGGATCTGTGAGTAGGTGGGTTCC
AAAACGTGGCCTCCTTGTAGTCAATCCATGTACATGGGGCTTGTAGCCGTGCCGAGGAGG
AGAACAAAAGTCAGGACGAAGGATGCGGGGGCCGCCGAGGAAGGCCACTCATACCCTCGC
GGTGAATCGCTGCCGTCGAGAGGGAGGTTAAGAAGGCTCTCCACTTGGCGTTGTTTAATT
TATATGTTACATCCTAAGCGCTGCCCTTTCCTTCCTCTCTTCTGGTTTCCGTGCAAGCAG
CTCACAGTATTTAAGATCAAGTTTACATCGTAATCCTCTCCAAATCTTTGCTTGATGAGT
ACTCAGAAATATCGGACTCGCCGCCGTAATTTAAAGCTTTGTTGACCTTGTTCGTTTTTG
TTTGGATTTCTTCGTTGTTGTTGTTGTCGTTTAAATTTTGGGGCAATGTGATTTTGCTGG
GATATGAAGTCTGAGACCTCCCTGTGCTGGGAACACATGAGAGTTGTTGAAAGTCGACAA
GCAGACAGCGCATGTCTCCGATGCCTTGTATCCTTCTCGAGTGATCGCTCGGTCCGTGGA
CAATAAACAGTATTATCAACGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGGCCAGTGGCATGAGCTGGCTGTGCCCTTTGCACACCCTGAGGACATCAGGAGCTGG
GTGCCGCCCTGTCCCCCAGGACGCCTCAGAGCGCCCTGAGAGCTTTGTGACCTCCCTGTG
CTGGGCGGGCTCCTGCGAGTGAAGCTGTTAGCTCAGTGTAGGGTGCAGTCCTTCCAACGG
TGGCATCAATAAGACTGCCATCGCTTTGTGGCCCTCCGGGACACTGTGGCCGGCTTTTCG
AGACATCTCATTCTTCTGAAGATGAATTCTCAGATGATATGTGAGCCCAAATCACGGGGG
TACCCCCCTCGGCTTGACTTTCTTGTATCACAAAGATCACCCAGTTAAGAAACTTCATAG
GGAGCTGGAGAACAGATCTGTCCCCCGAGGATGGTTTTCTGGTGCAAGTTTCCCAATAAC
AGTAAAGATAATCTCCTTTTTCTTCCCACCCACTCGCGGTGTATAAATCGGCTGTTCCGA
GTTTATGGTGTATATTAGGCAAACACACACACACACACACAGAGTGAAAGTGAAGTCTGT
CGGCCTGGGCGTGGTTCTCCTGCAGAGTTCTCCCAAAGTCAGCTTCTAAGCCTGCGCTAT
TCTGCGGTGACCCCAAAGCACCTTTCAGACGCCTGACCCCCCCCTGTGGCGTGCAGCCCC
CGTGCCCACCGGGACCCGGTCAGCACAGATTTTGATGACTCCCTTTCTAGGGCAGAGTCG
GGGAATCTGGCCCGCTCCGAGGGCCTCTTCATGCTGTGCAGTGATAGGAAGTTATAAGAT
GTCATGATGGACCAGTCCGTGTGAATCCAGTATATACGAGAACACCAGACCCTCCAATCA
ATATAACACCCCCCCCCCCCGTCTGCTTCCTGTATGGTGTTATCATATGTAACATTTACT
CCTGTTTCTGCTGATCTTTTTTAATGTTTGGGGTTTGTTTCTGGCATCCGTTGTAATCAT
TCCTGTGCTGTGTTTTTATGACTCTCAGTAGGGGTTAGACGTGCACCTTCTCTTCCCAAA
GGTTTCTGCCTCGTGGAAGCATCGGACCCAGAGTGGACGCGGCGTGGTCACCAGCCTCGG
ATGGGGACCCCCTCAGACCTTTCCTTCGGTCCCTTGAGTCCCATTGCCTTTCCACCTCCC
ACCTTTTGTTCTTCGGTTCCAATTATTACGAAGCGAAGGATCTGTGAGTAGGTGGGTTCC
AAAACGTGGCCTCCTTGTAGTCAATCCATGTACATGGGGCTTGTAGCCGTGCCGAGGAGG
AGAACAAAAGTCAGGACGAAGGATGCGGGGGCCGCCGAGGAAGGCCACTCATACCCTCGC
GGTGAATCGCTGCCGTCGAGAGGGAGGTTAAGAAGGCTCTCCACTTGGCGTTGTTTAATT
TATATGTTACATCCTAAGCGCTGCCCTTTCCTTCCTCTCTTCTGGTTTCCGTGCAAGCAG
CTCACAGTATTTAAGATCAAGTTTACATCGTAATCCTCTCCAAATCTTTGCTTGATGAGT
ACTCAGAAATATCGGACTCGCCGCCGTAATTTAAAGCTTTGTTGACCTTGTTCGTTTTTG
TTTGGATTTCTTCGTTGTTGTTGTTGTCGTTTAAATTTTGGGGCAATGTGATTTTGCTGG
GATATGAAGTCTGAGACCTCCCTGTGCTGGGAACACATGAGAGTTGTTGAAAGTCGACAA
GCAGACAGCGCATGTCTCCGATGCCTTGTATCCTTCTCGAGTGATCGCTCGGTCCGTGGA
CAATAAACAGTATTATCAACGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               406-1765, gnl|bosTau2|chr19 (46141788-46140430)
               

               
               406-1765, gnl|Hg17|chr17 (74361971-74360654)
               

               
               406-1765, gnl|Mm7|chr11 (118411447-118410106)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               406-1765, gnl|bosTau2|chr19 (46141788-46140430)
               

               
               406-1765, gnl|Hg17|chr17 (74361971-74360654)
               

               
               406-1765, gnl|Mm7|chr11 (118411447-118410106)

Expressed library(ies): 42 entry(ies)

More info

Expressed library(ies): 42 entry(ies)

Help | Less info


               
               cut (1.18946)
               

               
               cov (1.18937)
               

               
               fcc (0.988924)
               

               
               gul (0.887942)
               

               
               jca (0.797721)
               

               
               fat (0.58971)
               

               
               cga (0.558191)
               

               
               ton (0.526501)
               

               
               eep (0.490256)
               

               
               cag (0.453583)
               

               
               spc (0.453463)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 42 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (1.18946)
               

               
               cov (1.18937)
               

               
               fcc (0.988924)
               

               
               gul (0.887942)
               

               
               jca (0.797721)
               

               
               fat (0.58971)
               

               
               cga (0.558191)
               

               
               ton (0.526501)
               

               
               eep (0.490256)
               

               
               cag (0.453583)
               

               
               spc (0.453463)
               

               
               aor (0.390549)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	406-1765, gnl\|bosTau2\|chr19 (46141788-46140430)
	406-1765, gnl\|Hg17\|chr17 (74361971-74360654)
	406-1765, gnl\|Mm7\|chr11 (118411447-118410106)

	cut (1.18946)
	cov (1.18937)
	fcc (0.988924)
	gul (0.887942)
	jca (0.797721)
	fat (0.58971)
	cga (0.558191)
	ton (0.526501)
	eep (0.490256)
	cag (0.453583)
	spc (0.453463)
	aor (0.390549)
	col (0.390016)
	elu (0.385356)
	fbs (0.350693)
	rec (0.346141)
	fhi (0.339155)
	sme (0.305437)
	ski (0.29347)
	csk (0.281492)
	fce (0.271592)
	lyg (0.266205)
	ova (0.258264)
	sug (0.254582)
	cly (0.241284)
	eru (0.240096)
	nms (0.213858)
	eje (0.197668)
	eye (0.170503)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	eli (0.151814)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	ecc (0.115035)