Ss1.1-Mixc-0026l16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGTGGCCGGGGGCCGCTCAGCCTGAGGCCTACGTCAAGGGCTCCCCTGAGCTGGTGGC AGGCCTCTGCAACCCCGAGACAGTGCCCACCAGCTTCGCCCAGATGCTGCAGAGTTACAC GGCCACTGGCTACCGTGTAGTGGCCCTCGCCAGCAAGCCACTGCCCATCGCGCCCAGCCT GGAAGCAGCTCGGCAACTGACAAGGGACACTGTGGAGCGGGAGCTGAGGCTCCTGGGGCT GCTGGTCATGCGGAATCTGCTGAAGCCACAGACCACACCTGTCATCCAGGCTCTGCGGAG GACCTGCATCCGCACCGTCATGGTGACAGGGGACAACCTGCAGACGGCAGTCACTGTGGC CCAGAGCTGCGGCATGGTGGGCCCCCAGGAGCGCCTGGTCATCATCCACGCCACCCCCCC TGAGCAGGGCCAGCCTGCCTCCCTCGAGCTCCTGCCAGTGGAGTCCTCCGCAGCCAAGAA CGGGGCTAAGGATCCTGACCAGGCCGCAAGCTACACCATGGAGCCAGACCCCCGATCCAG CCACCTGGCCCTCAGCGGCTCCACCTTTGGTGTCCTTTTGAAGCACTTCCCCAAGCTGCT GCCCAAGGTCCTGGTCCAGGGCACTGTCTTTGCCCGCATGGCTCCAGAGCAGAAGACAGA GCTGGTGTGTGAACTGCAGAAGCTTCAGTACTGCGTGGGCATGTGCGGAGACGGCGCCAA CGACTGCGGGGCCCTGAAGGCGGCTGACGTGGGCATCTCGCTGTCCCAGGCCGAGGCCTC CGTGGTCTCGCCCTTCACCTCGAGCGTGGCCAGCATCGAGTGTGTGCCCATGGTCATCAG GGAGGGCCGTTGTTCCCTGGACACGTCGTTCAGCGTCTTCAAGTACATGGCCCTGTACAG CCTGACTCAGTTCATCTCCGTCCTGATCCTCTACACGGTCAACACCAACCTGGGCGATGT GCAGTTCCTGGTCATCGACCTGGTCATCACCACCACGGTGGCCGTGCTCATGAGCCGCAC CGGCCCGGCGCTGGCCCTGGGGCGGGCGCGGCCGCCAGGGGCCCTGCTCAGCGTGCCCGT GCTCAGCAGCCTGCTGCTTCAGGTGGCCCTGGTGGCTGGCGTGCAGCTGGGGGGCTACTT CCTGACCGTGGCCCAGCCCTGGTTCGTGCCTCTGAACAGGACAGTGCCCGCACCAGACAA CCTGCCCAACTACGAGAACACAGTGGTTTTTTCTCTGTCCAGCTTTCAGTACCTCATCCT GGCCGTGGCCATGTCCAAGGGGGCGCCCTTCCGCCGGCCGCTCTACACCAACGTGCCCTT CCTGGTGGCCCTGGCGCTCCTGGGCTCCCTCCTGGTGGGCCTCCTCCTGGCCCCCGGCCT CCTGCAGGGGCTGCTGGCGCTGAGGACCATTGCCGACACCTGCTTCAAGCTGCTGCTGCT GGGCCTGGTCGCCTTCAATTTCGTGGGGGCCTTCATGCTGGAGAGCGTGCTGGACCAGTG CCTCCCAGGCTGCCTGCGGTGGCTCCGGCCCAAACGGGTCTCCAAGAAGCTTTTCAAGCA GCTGGAGCGGGAGCTGGCCGAGCAGCCCTGGCCGCCGCCCGCCGGCCCCGTGAGGTAGTG CAGGCCCTGGCCGGTACCCTAGACACTGGAGCTCCCTGCCTCTGAGCCACAAACCGGGAC CCAGCCCTGAAGACGCCATCGCCATTACTCCCGCAGCCCCGAGATTGGCTGTTGTCACAC TTCGCCCCAAGTCTGCCCATCCCAGCCTTCCCTGCCCCCACCAGGGGAAACGCTATTGTT CGTTGGCCCCCACTTCAGACATCCACGTAGAGACGGCGGCCACCCCCACTCAGAGCCGTT GTCAGTGTAGCAAATAAAGTCATAATATTTTCCTGGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGTGGCCGGGGGCCGCTCAGCCTGAGGCCTACGTCAAGGGCTCCCCTGAGCTGGTGGC AGGCCTCTGCAACCCCGAGACAGTGCCCACCAGCTTCGCCCAGATGCTGCAGAGTTACAC GGCCACTGGCTACCGTGTAGTGGCCCTCGCCAGCAAGCCACTGCCCATCGCGCCCAGCCT GGAAGCAGCTCGGCAACTGACAAGGGACACTGTGGAGCGGGAGCTGAGGCTCCTGGGGCT GCTGGTCATGCGGAATCTGCTGAAGCCACAGACCACACCTGTCATCCAGGCTCTGCGGAG GACCTGCATCCGCACCGTCATGGTGACAGGGGACAACCTGCAGACGGCAGTCACTGTGGC CCAGAGCTGCGGCATGGTGGGCCCCCAGGAGCGCCTGGTCATCATCCACGCCACCCCCCC TGAGCAGGGCCAGCCTGCCTCCCTCGAGCTCCTGCCAGTGGAGTCCTCCGCAGCCAAGAA CGGGGCTAAGGATCCTGACCAGGCCGCAAGCTACACCATGGAGCCAGACCCCCGATCCAG CCACCTGGCCCTCAGCGGCTCCACCTTTGGTGTCCTTTTGAAGCACTTCCCCAAGCTGCT GCCCAAGGTCCTGGTCCAGGGCACTGTCTTTGCCCGCATGGCTCCAGAGCAGAAGACAGA GCTGGTGTGTGAACTGCAGAAGCTTCAGTACTGCGTGGGCATGTGCGGAGACGGCGCCAA CGACTGCGGGGCCCTGAAGGCGGCTGACGTGGGCATCTCGCTGTCCCAGGCCGAGGCCTC CGTGGTCTCGCCCTTCACCTCGAGCGTGGCCAGCATCGAGTGTGTGCCCATGGTCATCAG GGAGGGCCGTTGTTCCCTGGACACGTCGTTCAGCGTCTTCAAGTACATGGCCCTGTACAG CCTGACTCAGTTCATCTCCGTCCTGATCCTCTACACGGTCAACACCAACCTGGGCGATGT GCAGTTCCTGGTCATCGACCTGGTCATCACCACCACGGTGGCCGTGCTCATGAGCCGCAC CGGCCCGGCGCTGGCCCTGGGGCGGGCGCGGCCGCCAGGGGCCCTGCTCAGCGTGCCCGT GCTCAGCAGCCTGCTGCTTCAGGTGGCCCTGGTGGCTGGCGTGCAGCTGGGGGGCTACTT CCTGACCGTGGCCCAGCCCTGGTTCGTGCCTCTGAACAGGACAGTGCCCGCACCAGACAA CCTGCCCAACTACGAGAACACAGTGGTTTTTTCTCTGTCCAGCTTTCAGTACCTCATCCT GGCCGTGGCCATGTCCAAGGGGGCGCCCTTCCGCCGGCCGCTCTACACCAACGTGCCCTT CCTGGTGGCCCTGGCGCTCCTGGGCTCCCTCCTGGTGGGCCTCCTCCTGGCCCCCGGCCT CCTGCAGGGGCTGCTGGCGCTGAGGACCATTGCCGACACCTGCTTCAAGCTGCTGCTGCT GGGCCTGGTCGCCTTCAATTTCGTGGGGGCCTTCATGCTGGAGAGCGTGCTGGACCAGTG CCTCCCAGGCTGCCTGCGGTGGCTCCGGCCCAAACGGGTCTCCAAGAAGCTTTTCAAGCA GCTGGAGCGGGAGCTGGCCGAGCAGCCCTGGCCGCCGCCCGCCGGCCCCGTGAGGTAGTG CAGGCCCTGGCCGGTACCCTAGACACTGGAGCTCCCTGCCTCTGAGCCACAAACCGGGAC CCAGCCCTGAAGACGCCATCGCCATTACTCCCGCAGCCCCGAGATTGGCTGTTGTCACAC TTCGCCCCAAGTCTGCCCATCCCAGCCTTCCCTGCCCCCACCAGGGGAAACGCTATTGTT CGTTGGCCCCCACTTCAGACATCCACGTAGAGACGGCGGCCACCCCCACTCAGAGCCGTT GTCAGTGTAGCAAATAAAGTCATAATATTTTCCTGGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1046-1416, + strand, RNAz p=0.762361 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1046-1416, + strand, RNAz p=0.762361 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 74-205, gnl|bosTau2|chr2 (86133428-86133559) | |
| 74-205, gnl|Hg17|chr1 (17063939-17063809) | |
| 74-205, gnl|Mm7|chr4 (140381330-140381461) | |
| 327-491, gnl|bosTau2|chr2 (86134909-86135073) | |
| 327-491, gnl|Hg17|chr1 (17062091-17061927) | |
| 327-491, gnl|Mm7|chr4 (140382324-140382488) | |
| 688-847, gnl|bosTau2|chr2 (86135945-86136104) | |
| 688-847, gnl|Hg17|chr1 (17060275-17060116) | |
| 688-847, gnl|Mm7|chr4 (140383443-140383602) | |
| 937-1163, gnl|bosTau2|chr2 (86137005-86137231) | |
| 937-1163, gnl|canFam2|chr2 (84111033-84110769) | |
| 937-1163, gnl|danRer3|chr23 (42818964-42819201) | |
| 937-1163, gnl|dasNov1|scaffold_135388 (891-621) | |
| 937-1163, gnl|fr1|chrUn (103309918-103310176) | |
| 937-1163, gnl|hg17|chr1 (17058834-17059101) | |
| 937-1163, gnl|Hg17|chr1 (17059071-17058845) | |
| 937-1163, gnl|loxAfr1|scaffold_6872 (51412-51143) | |
| 937-1163, gnl|mm7|chr4 (140384720-140384461) | |
| 937-1163, gnl|Mm7|chr4 (140384483-140384709) | |
| 937-1163, gnl|monDom2|scaffold_109 (2388864-2388615) | |
| 937-1163, gnl|oryCun1|scaffold_129442 (1522-1788) | |
| 937-1163, gnl|panTro1|chr1 (17230295-17230562) | |
| 937-1163, gnl|rheMac2|chr1 (19613944-19614211) | |
| 937-1163, gnl|rn3|chr5 (159875538-159875280) | |
| 937-1163, gnl|tetNig1|chrUn_random (28230326-28230106) | |
| 1300-1483, gnl|bosTau2|chr2 (86137549-86137733) | |
| 1300-1483, gnl|Hg17|chr1 (17058449-17058264) | |
| 1300-1483, gnl|Mm7|chr4 (140385104-140385289) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 74-205, gnl|bosTau2|chr2 (86133428-86133559) | |
| 74-205, gnl|Hg17|chr1 (17063939-17063809) | |
| 74-205, gnl|Mm7|chr4 (140381330-140381461) | |
| 327-491, gnl|bosTau2|chr2 (86134909-86135073) | |
| 327-491, gnl|Hg17|chr1 (17062091-17061927) | |
| 327-491, gnl|Mm7|chr4 (140382324-140382488) | |
| 688-847, gnl|bosTau2|chr2 (86135945-86136104) | |
| 688-847, gnl|Hg17|chr1 (17060275-17060116) | |
| 688-847, gnl|Mm7|chr4 (140383443-140383602) | |
| 937-1163, gnl|bosTau2|chr2 (86137005-86137231) | |
| 937-1163, gnl|canFam2|chr2 (84111033-84110769) | |
| 937-1163, gnl|danRer3|chr23 (42818964-42819201) | |
| 937-1163, gnl|dasNov1|scaffold_135388 (891-621) | |
| 937-1163, gnl|fr1|chrUn (103309918-103310176) | |
| 937-1163, gnl|hg17|chr1 (17058834-17059101) | |
| 937-1163, gnl|Hg17|chr1 (17059071-17058845) | |
| 937-1163, gnl|loxAfr1|scaffold_6872 (51412-51143) | |
| 937-1163, gnl|mm7|chr4 (140384720-140384461) | |
| 937-1163, gnl|Mm7|chr4 (140384483-140384709) | |
| 937-1163, gnl|monDom2|scaffold_109 (2388864-2388615) | |
| 937-1163, gnl|oryCun1|scaffold_129442 (1522-1788) | |
| 937-1163, gnl|panTro1|chr1 (17230295-17230562) | |
| 937-1163, gnl|rheMac2|chr1 (19613944-19614211) | |
| 937-1163, gnl|rn3|chr5 (159875538-159875280) | |
| 937-1163, gnl|tetNig1|chrUn_random (28230326-28230106) | |
| 1300-1483, gnl|bosTau2|chr2 (86137549-86137733) | |
| 1300-1483, gnl|Hg17|chr1 (17058449-17058264) | |
| 1300-1483, gnl|Mm7|chr4 (140385104-140385289) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| fce (0.543183) | |
| ecc (0.46014) | |
| hyp (0.42851) | |
| ece (0.229305) | |
| jej (0.197844) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| ecc (0.46014) | |
| hyp (0.42851) | |
| ece (0.229305) | |
| jej (0.197844) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cty (0.10408) |