Ss1.1-Mixc-0026n02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGTTTAGCATTTTTGGCCTTCTGTGGGCGTCTTCTTGGGGGCTACATGAGCCACTGTCA TCATGCTCACAGACGCTGGAGCCAGAGTTGGGTCTACTCTGGTCATTCCTCCGCCAAGAA GAAAGGTGGAAACCACATCCCGGAAAGGTGGAAAGACTATCTCCCAGTTGGACAGCGGAT GCCTGGGACACGTTTCATTGCTTTCAAAGTTCCTTTGAAAAAGAGTTTTGAAAAGAAACT TACTCCAGAAGAACGTTTTTCCCCCTTGGATCTTTTTAACAAAATCCAGGAACAGAATGA AAAACTTGGACTGATTATTGATTTAACATATACTCGCCGCTATTATAAACCAGAGGACTT ACCAGAAACTATTCGTTACTTAAAAATTTATACGGTTGGGCATCATGTACCTGATGACAA GACTATTTTTAAATTCAAATGTGCTGTTGATGGGTTTTTGAAAGAAAATAAAGATAATGA CAGACTGATTGGTGTCCACTGTACCCATGGCTTAAACAGGACTGGCTACCTCATTTGCAG GTATTTGATTGATGTAGAAGGCATGAAGCCAGATGATGCAATTGAATTATTCAATAGGAG CCGTGGACATTGCATAGAAAGACAAAACTACATTGAAGACCTTCAGAGTGGTCCCATCAG AAAAAAATTTTCGCAGCATCGGAACACTTACCAGAGAAGCCGTACTCCTCCTCCTGGTCC CCCCGGCGAGGACCATTTCCAGAGGAGGTACTCTTGGAACGTAAAGCCAAATACCAGTCA CGCAACCCAGAACAAAAGGTGGTATTCTAGCAGTTACCACAGACCATCCTATCCAAAGTA CTATGGATGAACCGAGTGAGACAAACCTACGCTGGAGACAGAGCAAGACTGAAGACAGCT GGAGTGACTTTTTATAGGATCAGGTCAAATGACGTTTATAATCTATTTTACTGCTCCTTT ATGTGTTCAAGCCTAGGGAAAAATTATATTGGTACTTAACCTTTGCTGATAAATTTGCAG TATTTACAACAGTGAAGGCAATAATCTGTCATTGAGTCTTAAATTTTTTTAAAGGAAGAT AAGTAAAAGTAATAAAGAATTCCCCTTGTAAATTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGTTTAGCATTTTTGGCCTTCTGTGGGCGTCTTCTTGGGGGCTACATGAGCCACTGTCA TCATGCTCACAGACGCTGGAGCCAGAGTTGGGTCTACTCTGGTCATTCCTCCGCCAAGAA GAAAGGTGGAAACCACATCCCGGAAAGGTGGAAAGACTATCTCCCAGTTGGACAGCGGAT GCCTGGGACACGTTTCATTGCTTTCAAAGTTCCTTTGAAAAAGAGTTTTGAAAAGAAACT TACTCCAGAAGAACGTTTTTCCCCCTTGGATCTTTTTAACAAAATCCAGGAACAGAATGA AAAACTTGGACTGATTATTGATTTAACATATACTCGCCGCTATTATAAACCAGAGGACTT ACCAGAAACTATTCGTTACTTAAAAATTTATACGGTTGGGCATCATGTACCTGATGACAA GACTATTTTTAAATTCAAATGTGCTGTTGATGGGTTTTTGAAAGAAAATAAAGATAATGA CAGACTGATTGGTGTCCACTGTACCCATGGCTTAAACAGGACTGGCTACCTCATTTGCAG GTATTTGATTGATGTAGAAGGCATGAAGCCAGATGATGCAATTGAATTATTCAATAGGAG CCGTGGACATTGCATAGAAAGACAAAACTACATTGAAGACCTTCAGAGTGGTCCCATCAG AAAAAAATTTTCGCAGCATCGGAACACTTACCAGAGAAGCCGTACTCCTCCTCCTGGTCC CCCCGGCGAGGACCATTTCCAGAGGAGGTACTCTTGGAACGTAAAGCCAAATACCAGTCA CGCAACCCAGAACAAAAGGTGGTATTCTAGCAGTTACCACAGACCATCCTATCCAAAGTA CTATGGATGAACCGAGTGAGACAAACCTACGCTGGAGACAGAGCAAGACTGAAGACAGCT GGAGTGACTTTTTATAGGATCAGGTCAAATGACGTTTATAATCTATTTTACTGCTCCTTT ATGTGTTCAAGCCTAGGGAAAAATTATATTGGTACTTAACCTTTGCTGATAAATTTGCAG TATTTACAACAGTGAAGGCAATAATCTGTCATTGAGTCTTAAATTTTTTTAAAGGAAGAT AAGTAAAAGTAATAAAGAATTCCCCTTGTAAATTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 4-149, gnl|bosTau2|chr11 (9509270-9509415) | |
| 4-149, gnl|canFam2|chr17 (52317078-52316843) | |
| 4-149, gnl|dasNov1|scaffold_140317 (524-283) | |
| 4-149, gnl|echTel1|scaffold_323101 (73363-73124) | |
| 4-149, gnl|hg17|chr2 (73918655-73918893) | |
| 4-149, gnl|Hg17|chr2 (73918799-73918654) | |
| 4-149, gnl|loxAfr1|scaffold_50514 (15476-15714) | |
| 4-149, gnl|mm7|chr6 (83624617-83624424) | |
| 4-149, gnl|Mm7|chr6 (86036664-86036522) | |
| 4-149, gnl|oryCun1|scaffold_210631 (10916-10691) | |
| 4-149, gnl|panTro1|chr12 (76338360-76338598) | |
| 4-149, gnl|rheMac2|chr13 (74018254-74018492) | |
| 4-149, gnl|rn3|chr4 (120352529-120352760) | |
| 222-356, gnl|bosTau2|chr11 (9512356-9512490) | |
| 222-356, gnl|canFam2|chr17 (52322474-52322325) | |
| 222-356, gnl|danRer3|chrNA (111589463-111589585) | |
| 222-356, gnl|dasNov1|scaffold_5945 (5817-5687) | |
| 222-356, gnl|hg17|chr2 (73913678-73913827) | |
| 222-356, gnl|Hg17|chr2 (73913828-73913694) | |
| 222-356, gnl|loxAfr1|scaffold_61427 (9189-9053) | |
| 222-356, gnl|mm7|chr6 (83656261-83656137) | |
| 222-356, gnl|Mm7|chr6 (86033803-86033669) | |
| 222-356, gnl|monDom2|scaffold_104 (4218310-4218455) | |
| 222-356, gnl|oryCun1|scaffold_196277 (24989-25138) | |
| 222-356, gnl|panTro1|chr12 (76333376-76333525) | |
| 222-356, gnl|rheMac2|chr13 (74013342-74013491) | |
| 222-356, gnl|rn3|chr4 (120349631-120349779) | |
| 661-1123, gnl|bosTau2|chr11 (9524711-9525197) | |
| 661-1123, gnl|Hg17|chr2 (73901644-73901161) | |
| 661-1123, gnl|Mm7|chr6 (86022865-86022441) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-149, gnl|bosTau2|chr11 (9509270-9509415) | |
| 4-149, gnl|canFam2|chr17 (52317078-52316843) | |
| 4-149, gnl|dasNov1|scaffold_140317 (524-283) | |
| 4-149, gnl|echTel1|scaffold_323101 (73363-73124) | |
| 4-149, gnl|hg17|chr2 (73918655-73918893) | |
| 4-149, gnl|Hg17|chr2 (73918799-73918654) | |
| 4-149, gnl|loxAfr1|scaffold_50514 (15476-15714) | |
| 4-149, gnl|mm7|chr6 (83624617-83624424) | |
| 4-149, gnl|Mm7|chr6 (86036664-86036522) | |
| 4-149, gnl|oryCun1|scaffold_210631 (10916-10691) | |
| 4-149, gnl|panTro1|chr12 (76338360-76338598) | |
| 4-149, gnl|rheMac2|chr13 (74018254-74018492) | |
| 4-149, gnl|rn3|chr4 (120352529-120352760) | |
| 222-356, gnl|bosTau2|chr11 (9512356-9512490) | |
| 222-356, gnl|canFam2|chr17 (52322474-52322325) | |
| 222-356, gnl|danRer3|chrNA (111589463-111589585) | |
| 222-356, gnl|dasNov1|scaffold_5945 (5817-5687) | |
| 222-356, gnl|hg17|chr2 (73913678-73913827) | |
| 222-356, gnl|Hg17|chr2 (73913828-73913694) | |
| 222-356, gnl|loxAfr1|scaffold_61427 (9189-9053) | |
| 222-356, gnl|mm7|chr6 (83656261-83656137) | |
| 222-356, gnl|Mm7|chr6 (86033803-86033669) | |
| 222-356, gnl|monDom2|scaffold_104 (4218310-4218455) | |
| 222-356, gnl|oryCun1|scaffold_196277 (24989-25138) | |
| 222-356, gnl|panTro1|chr12 (76333376-76333525) | |
| 222-356, gnl|rheMac2|chr13 (74013342-74013491) | |
| 222-356, gnl|rn3|chr4 (120349631-120349779) | |
| 661-1123, gnl|bosTau2|chr11 (9524711-9525197) | |
| 661-1123, gnl|Hg17|chr2 (73901644-73901161) | |
| 661-1123, gnl|Mm7|chr6 (86022865-86022441) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| tes (0.623441) | |
| fty (0.527519) | |
| lin (0.436808) | |
| amn (0.417711) | |
| elu (0.385356) | |
| fat (0.294855) | |
| cte (0.29274) | |
| liv (0.292569) | |
| spl (0.286369) | |
| pla (0.267344) | |
| bla (0.248694) | |
| fcc (0.197785) | |
| col (0.195008) | |
| gul (0.177588) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| isp (0.150376) | |
| ski (0.146735) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| fty (0.527519) | |
| lin (0.436808) | |
| amn (0.417711) | |
| elu (0.385356) | |
| fat (0.294855) | |
| cte (0.29274) | |
| liv (0.292569) | |
| spl (0.286369) | |
| pla (0.267344) | |
| bla (0.248694) | |
| fcc (0.197785) | |
| col (0.195008) | |
| gul (0.177588) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| isp (0.150376) | |
| ski (0.146735) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |