Non-Coding RNA Search

Ss1.1-Mixc-0026n17.5

Sequence:


               
               GCTAGCAGAGGCCTTTTCCCCGCCAGCCGTCCTCCGCGCCCGGGCGCGGGACTGGCATCA
GGGCGGAAGCGGTCGCCAGGTACTGCGGCGCCTCTCCCCAGGATGCGCCACTGGAACCCT
GTGCTGTCTCCGGAACCGCTACTCCGCCGGAAACCGACGGGCAGTCCAGCCGAGCGTTGA
CGGAGGAGACCCGGGCGACTTTTCGGAAACCGGAACGCAGACGCCTCGGACTGCAGGGCT
CTTTGGTCTCTTTGCAACGCCGGACGGCGGCGTAGTCCTTCCCTTACTTCTGCTGCCATG
TTTAGGGCCCTAGACTACATTTCCCAGGTCGCTTCGCGCGAACCTTCAGATCTCGCGAGA
ACTCTGGCCTGGAACCCTCCGGGGGAGGAGACTCGCGCGGACCGCCGGGAGTTGTAGTTC
CGGTTTGGGAGCTGTGCTCCCTGGCACCCGGGCTGAGAGACTTCAAGTCCCAAGGGGGCA
CAGCGCGACCGCCTGGAGGGCGGGGGGTATGAAAGAGGAACCCGGAGGGCGCAGGGGACC
AGCAGCCCGAGTGTTGTGTGGACGTGGTGGACACCAATGCCACCTGCCCGGGCACAAGCC
TGTGTGGCCCAGGCTGCTACGGGCGCTGGGATGAGGACGGCACGGTCAGCTGCGTGCGGT
GCAGGAATGGGACCCACAGCAGCTCTGAGTGCAGGAGCCGGGGCCCTCAGGTGGCAGCCT
GCCTCTTCCTGGGGACACTTCTCATCAGCGCGGGCCTCATCCTCTCCGTGGCTGCGTTCT
TCTACCTCAAGCGAGCCAGTAAACTGCCCGGGCTCTTCTACAGAAGGAGCAGAGCGCCTG
CCCTGCAGCCTGGCGAAGCGGCCGCGATGATCCCCCCGCCGCAGTCCTCAGTGCGGAAGC
CACGCTACGTCAGGCGTGAGCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAGCAGAGGCCTTTTCCCCGCCAGCCGTCCTCCGCGCCCGGGCGCGGGACTGGCATCA
GGGCGGAAGCGGTCGCCAGGTACTGCGGCGCCTCTCCCCAGGATGCGCCACTGGAACCCT
GTGCTGTCTCCGGAACCGCTACTCCGCCGGAAACCGACGGGCAGTCCAGCCGAGCGTTGA
CGGAGGAGACCCGGGCGACTTTTCGGAAACCGGAACGCAGACGCCTCGGACTGCAGGGCT
CTTTGGTCTCTTTGCAACGCCGGACGGCGGCGTAGTCCTTCCCTTACTTCTGCTGCCATG
TTTAGGGCCCTAGACTACATTTCCCAGGTCGCTTCGCGCGAACCTTCAGATCTCGCGAGA
ACTCTGGCCTGGAACCCTCCGGGGGAGGAGACTCGCGCGGACCGCCGGGAGTTGTAGTTC
CGGTTTGGGAGCTGTGCTCCCTGGCACCCGGGCTGAGAGACTTCAAGTCCCAAGGGGGCA
CAGCGCGACCGCCTGGAGGGCGGGGGGTATGAAAGAGGAACCCGGAGGGCGCAGGGGACC
AGCAGCCCGAGTGTTGTGTGGACGTGGTGGACACCAATGCCACCTGCCCGGGCACAAGCC
TGTGTGGCCCAGGCTGCTACGGGCGCTGGGATGAGGACGGCACGGTCAGCTGCGTGCGGT
GCAGGAATGGGACCCACAGCAGCTCTGAGTGCAGGAGCCGGGGCCCTCAGGTGGCAGCCT
GCCTCTTCCTGGGGACACTTCTCATCAGCGCGGGCCTCATCCTCTCCGTGGCTGCGTTCT
TCTACCTCAAGCGAGCCAGTAAACTGCCCGGGCTCTTCTACAGAAGGAGCAGAGCGCCTG
CCCTGCAGCCTGGCGAAGCGGCCGCGATGATCCCCCCGCCGCAGTCCTCAGTGCGGAAGC
CACGCTACGTCAGGCGTGAGCGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61835568|ref|XP_586195.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61835568|ref|XP_586195.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               374-537, + strand, RNAz p=0.999239

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               374-537, + strand, RNAz p=0.999239

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               299-537, gnl|bosTau2|chr16 (41192099-41192347)
               

               
               299-537, gnl|canFam2|chr5 (59323001-59323285)
               

               
               299-537, gnl|dasNov1|scaffold_168231 (649-1096)
               

               
               299-537, gnl|hg17|chr1 (1091141-1091599)
               

               
               299-537, gnl|Hg17|chr1 (1091598-1091362)
               

               
               299-537, gnl|loxAfr1|scaffold_55782 (237-748)
               

               
               299-537, gnl|rheMac2|chr1 (4185792-4186250)
               


               
               700-834, gnl|bosTau2|chr16 (41214729-41214863)
               

               
               700-834, gnl|canFam2|chr5 (59301417-59301579)
               

               
               700-834, gnl|danRer3|chr24 (16638189-16638039)
               

               
               700-834, gnl|fr1|chrUn (198852730-198852880)
               

               
               700-834, gnl|hg17|chr1 (1061171-1061329)
               

               
               700-834, gnl|Hg17|chr1 (1061315-1061181)
               

               
               700-834, gnl|mm7|chr4 (155113221-155113060)
               

               
               700-834, gnl|Mm7|chr4 (155113077-155113211)
               

               
               700-834, gnl|monDom2|scaffold_219 (76596-76753)
               

               
               700-834, gnl|oryCun1|scaffold_171410 (4192-4044)
               

               
               700-834, gnl|panTro1|chr1 (942721-942879)
               

               
               700-834, gnl|rheMac2|chr1 (4159800-4159958)
               

               
               700-834, gnl|rn3|chr5 (172976470-172976309)
               

               
               700-834, gnl|tetNig1|chr11 (5289178-5289330)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               299-537, gnl|bosTau2|chr16 (41192099-41192347)
               

               
               299-537, gnl|canFam2|chr5 (59323001-59323285)
               

               
               299-537, gnl|dasNov1|scaffold_168231 (649-1096)
               

               
               299-537, gnl|hg17|chr1 (1091141-1091599)
               

               
               299-537, gnl|Hg17|chr1 (1091598-1091362)
               

               
               299-537, gnl|loxAfr1|scaffold_55782 (237-748)
               

               
               299-537, gnl|rheMac2|chr1 (4185792-4186250)
               


               
               700-834, gnl|bosTau2|chr16 (41214729-41214863)
               

               
               700-834, gnl|canFam2|chr5 (59301417-59301579)
               

               
               700-834, gnl|danRer3|chr24 (16638189-16638039)
               

               
               700-834, gnl|fr1|chrUn (198852730-198852880)
               

               
               700-834, gnl|hg17|chr1 (1061171-1061329)
               

               
               700-834, gnl|Hg17|chr1 (1061315-1061181)
               

               
               700-834, gnl|mm7|chr4 (155113221-155113060)
               

               
               700-834, gnl|Mm7|chr4 (155113077-155113211)
               

               
               700-834, gnl|monDom2|scaffold_219 (76596-76753)
               

               
               700-834, gnl|oryCun1|scaffold_171410 (4192-4044)
               

               
               700-834, gnl|panTro1|chr1 (942721-942879)
               

               
               700-834, gnl|rheMac2|chr1 (4159800-4159958)
               

               
               700-834, gnl|rn3|chr5 (172976470-172976309)
               

               
               700-834, gnl|tetNig1|chr11 (5289178-5289330)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	299-537, gnl\|bosTau2\|chr16 (41192099-41192347)
	299-537, gnl\|canFam2\|chr5 (59323001-59323285)
	299-537, gnl\|dasNov1\|scaffold_168231 (649-1096)
	299-537, gnl\|hg17\|chr1 (1091141-1091599)
	299-537, gnl\|Hg17\|chr1 (1091598-1091362)
	299-537, gnl\|loxAfr1\|scaffold_55782 (237-748)
	299-537, gnl\|rheMac2\|chr1 (4185792-4186250)

	700-834, gnl\|bosTau2\|chr16 (41214729-41214863)
	700-834, gnl\|canFam2\|chr5 (59301417-59301579)
	700-834, gnl\|danRer3\|chr24 (16638189-16638039)
	700-834, gnl\|fr1\|chrUn (198852730-198852880)
	700-834, gnl\|hg17\|chr1 (1061171-1061329)
	700-834, gnl\|Hg17\|chr1 (1061315-1061181)
	700-834, gnl\|mm7\|chr4 (155113221-155113060)
	700-834, gnl\|Mm7\|chr4 (155113077-155113211)
	700-834, gnl\|monDom2\|scaffold_219 (76596-76753)
	700-834, gnl\|oryCun1\|scaffold_171410 (4192-4044)
	700-834, gnl\|panTro1\|chr1 (942721-942879)
	700-834, gnl\|rheMac2\|chr1 (4159800-4159958)
	700-834, gnl\|rn3\|chr5 (172976470-172976309)
	700-834, gnl\|tetNig1\|chr11 (5289178-5289330)