Non-Coding RNA Search

Ss1.1-Mixc-0026o08.3

Sequence:


               
               AGACACTAGCGGAACTGCATCGCTACACCCCGCGCTACATGGAGGACATGGAACAGGCCT
TCGAGACCTGCCAGGCTGCCGAGCGCCAGCGGCTTCTCTTTTTTAAGGATATGCTGCTCA
CCTTACACCAGCACTTGGACCTTTCCAGCAGCGAGAGGTTCCACGAACTCCATCGAGACC
TGCATCAGGGCATCGAGGCAGCCAGTGATGAAGAGGATCTGCGCTGGTGGCGCAGCACCC
ACGGGCCGGGCATGGCCATGAACTGGCCACAGTTTGAGGAGTGGTCCTTGGATACACAGA
GGACAATCAGCCGGAAGGAGAAGGGTGGCCGGAGCCCTGATGAGGTTACTCTGACCAGCA
TCGTGCCCACAAGAGATGGTGCTGCACCCCCACCCCAGGCCCCAGGGTCCCCAGGTGGCA
GGCAGGATGAGGAGTGGTCAGACGAGGACAACCCCCGGAAGGCTGCCACTGGGGTCCGGG
TGCGGGCACTCTATGACTACGCGGGCCAGGAAGCCGATGAGCTGAGCTTCCGAGCAGGGG
AGGAGCTGCTGAAGATGAGCGAGGAGGATGAGCAGGGCTGGTGCCAGGGCCAGCTGCAGA
GTGGCCGGATTGGCCTGTACCCTGCCAACTACGTTGAGTGTGTGGGGGCCTGACCTGCCC
TTACAGCCCTTCTACATGTTTCTCCACCCCCACCACCCCTTTCAGTCTGAGCCTAGCTTG
TCTGGGCAGCTGGACTTGAGGGCCCTGAACCATGCTGCCCCTGGTGGCCCTCTGTCCCTT
TCAGGAGAGAGGAAGTCTTGAGACTCCCAGGAGCAAAGGGGCCTGCCTCTAGGAAGGGAC
TGGTAGGGAAGGGCCAACTGAGTCTGGACTGAGGGGAAGGTGGGAAGGTCAGGAGGTAAC
AAAAGGGCTCAGGGGTGCCTGGGCCTCCCCAGGAATACCCTGGTCTCCCCAGGAGTTGTG
GACCCAGTGCCCAGTCTGTGTTTTGAGCTTCCTGGGGCGCGCTTGGGGTGAGTGTAGTTC
TGGGCTAGCAGCACTCTTTTGTGGCTTCTAGTGTGTATTAAACTTGGAAGAAATAAACTT
GGAAGAAAAACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACACTAGCGGAACTGCATCGCTACACCCCGCGCTACATGGAGGACATGGAACAGGCCT
TCGAGACCTGCCAGGCTGCCGAGCGCCAGCGGCTTCTCTTTTTTAAGGATATGCTGCTCA
CCTTACACCAGCACTTGGACCTTTCCAGCAGCGAGAGGTTCCACGAACTCCATCGAGACC
TGCATCAGGGCATCGAGGCAGCCAGTGATGAAGAGGATCTGCGCTGGTGGCGCAGCACCC
ACGGGCCGGGCATGGCCATGAACTGGCCACAGTTTGAGGAGTGGTCCTTGGATACACAGA
GGACAATCAGCCGGAAGGAGAAGGGTGGCCGGAGCCCTGATGAGGTTACTCTGACCAGCA
TCGTGCCCACAAGAGATGGTGCTGCACCCCCACCCCAGGCCCCAGGGTCCCCAGGTGGCA
GGCAGGATGAGGAGTGGTCAGACGAGGACAACCCCCGGAAGGCTGCCACTGGGGTCCGGG
TGCGGGCACTCTATGACTACGCGGGCCAGGAAGCCGATGAGCTGAGCTTCCGAGCAGGGG
AGGAGCTGCTGAAGATGAGCGAGGAGGATGAGCAGGGCTGGTGCCAGGGCCAGCTGCAGA
GTGGCCGGATTGGCCTGTACCCTGCCAACTACGTTGAGTGTGTGGGGGCCTGACCTGCCC
TTACAGCCCTTCTACATGTTTCTCCACCCCCACCACCCCTTTCAGTCTGAGCCTAGCTTG
TCTGGGCAGCTGGACTTGAGGGCCCTGAACCATGCTGCCCCTGGTGGCCCTCTGTCCCTT
TCAGGAGAGAGGAAGTCTTGAGACTCCCAGGAGCAAAGGGGCCTGCCTCTAGGAAGGGAC
TGGTAGGGAAGGGCCAACTGAGTCTGGACTGAGGGGAAGGTGGGAAGGTCAGGAGGTAAC
AAAAGGGCTCAGGGGTGCCTGGGCCTCCCCAGGAATACCCTGGTCTCCCCAGGAGTTGTG
GACCCAGTGCCCAGTCTGTGTTTTGAGCTTCCTGGGGCGCGCTTGGGGTGAGTGTAGTTC
TGGGCTAGCAGCACTCTTTTGTGGCTTCTAGTGTGTATTAAACTTGGAAGAAATAAACTT
GGAAGAAAAACAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15080241|gb|AAH11889.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15080241|gb|AAH11889.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               771-967, + strand, RNAz p=0.997647

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               771-967, + strand, RNAz p=0.997647

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016223, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016223, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-159, gnl|bosTau2|chr15 (49098603-49098761)
               

               
               1-159, gnl|Hg17|chr11 (47157694-47157536)
               

               
               1-159, gnl|Mm7|chr2 (91113503-91113661)
               


               
               245-408, gnl|bosTau2|chr15 (49099185-49099346)
               

               
               245-408, gnl|Hg17|chr11 (47157189-47157019)
               

               
               245-408, gnl|Mm7|chr2 (91113990-91114141)
               


               
               535-1077, gnl|bosTau2|chr15 (49100462-49100993)
               

               
               535-1077, gnl|Hg17|chr11 (47156176-47155656)
               

               
               535-1077, gnl|Mm7|chr2 (91114904-91115380)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-159, gnl|bosTau2|chr15 (49098603-49098761)
               

               
               1-159, gnl|Hg17|chr11 (47157694-47157536)
               

               
               1-159, gnl|Mm7|chr2 (91113503-91113661)
               


               
               245-408, gnl|bosTau2|chr15 (49099185-49099346)
               

               
               245-408, gnl|Hg17|chr11 (47157189-47157019)
               

               
               245-408, gnl|Mm7|chr2 (91113990-91114141)
               


               
               535-1077, gnl|bosTau2|chr15 (49100462-49100993)
               

               
               535-1077, gnl|Hg17|chr11 (47156176-47155656)
               

               
               535-1077, gnl|Mm7|chr2 (91114904-91115380)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               eye (0.511509)
               

               
               elu (0.385356)
               

               
               cki (0.330469)
               

               
               cst (0.280073)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               elu (0.385356)
               

               
               cki (0.330469)
               

               
               cst (0.280073)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

	1-159, gnl\|bosTau2\|chr15 (49098603-49098761)
	1-159, gnl\|Hg17\|chr11 (47157694-47157536)
	1-159, gnl\|Mm7\|chr2 (91113503-91113661)

	245-408, gnl\|bosTau2\|chr15 (49099185-49099346)
	245-408, gnl\|Hg17\|chr11 (47157189-47157019)
	245-408, gnl\|Mm7\|chr2 (91113990-91114141)

	535-1077, gnl\|bosTau2\|chr15 (49100462-49100993)
	535-1077, gnl\|Hg17\|chr11 (47156176-47155656)
	535-1077, gnl\|Mm7\|chr2 (91114904-91115380)

	eye (0.511509)
	elu (0.385356)
	cki (0.330469)
	cst (0.280073)
	nms (0.213858)
	mas (0.210305)
	fli (0.202881)
	col (0.195008)
	ton (0.1755)
	hyp (0.142837)
	che (0.136314)
	ssp (0.13552)
	cly (0.120642)
	eru (0.120048)
	ldo (0.0970026)