Ss1.1-Mixc-0026o12.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTCTCATACCTGGAACTGGGCATCATAGCCGACGCCGCTGTCCGCTTTCTGGAGGGCC GCGGGGTGAAGATTGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCCCTGGAGATGCCTG GCGTCTCTCTCACCCTTCTGCTGGTGGACGAGCCCCTCCTGAAACTGATAGATGCCGAAA CCACCGCAGCAGCCTGGCCTAACGTGGCCAAGGTCTCTGTGACTGGGCGGAAGCGGAGCC GGGCCGCCCCTGCCGAGCCCCCGGAGGCTCCTGATGCCACTGCTGCAGGAGGCGCGACCT CGAAGCAGATGGTGCGTGTGCTGGAGCGGGTGTGCACCACCCTCCTGGGCCTGGAGGACC AGCTGAATGCCCTGGACCGCGCTGCCGGCGACGGGGACTGCGGCACCACCCACAGCCGTG CTGCCAGAGCGATTCAGGGCTGGCTGAAGGAGAGCCCACCACCCGCCAGTCCTGCCCAGC TACTCTCCAAATTGTCCCTCCTGCTACTGGAGAAGATGGGAGGCTCATCCGGGGCACTCT ATGGCCTGTTCCTGACTGCGGCGGCCCAGCCGCTCAAGGCCAAGACTGACCTCGCAGCCT GGTCTGCTGCCATGGATGCCGGCCTGGAGGCCATGCAGAAGTACGGAAAGGCTGCCCCAG GGGACAGGACTATGCTGGATTCCCTGTGGGCAGCAGGACAGGAGCTCCAAGCCTGGAAGA GCCCGGGGGCTAACCTGCTCCCAGTCCTGACCAAGGCAGTCAAGAACGCAGAGGCTGCAG CTGAAGCCACCAAGAACATGGAAGCTGGAGCTGGAAGAGCCAGTTATATCAGCTCTGCGC GGCTGGATCAGCCAGACCCCGGGGCAGTGGCGGCCGCTGCCATTCTCCGCGCCATCCTGG AGGTTCTGCAGAGCCAGGGGGCATGAAAGCCTCCCTGGGGCTCAGTGCCTCCCATTGCTG TGCACAGTGGCCACTGTCACTTATTTCTGCCTTCCAACTGTCGCCCTCCCCTGCCTACCC TCAGGGCCAGTCCTCTGAGTTCAGCAGGAATCCCTCAGGCAGCGTCCAGAATTACTCCAC TGTAGACACTGCAGGCTCCAGTAGGTCACTACCCCTTCCCTCTTCAGGCAAGGTGGAGTC TCGGGTCACCCGGCTGTCCCCAGCCAACCCTGGGCTTCCGTGATAAGGCCTTTCTGTGGG TGACAGCACAGCCCTTAACGGGCAACGCGAATTTGGTTTTAAGACTCCCCGTGAAAGGCC TTCTGTACCTGAGCTGAGCCAGTGTGGAAAAGCAAGTCAATAAACACACGGAAGCCAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTCTCATACCTGGAACTGGGCATCATAGCCGACGCCGCTGTCCGCTTTCTGGAGGGCC GCGGGGTGAAGATTGCCCGTGCCCTGGTGGGCACCTTCATGTCAGCCCTGGAGATGCCTG GCGTCTCTCTCACCCTTCTGCTGGTGGACGAGCCCCTCCTGAAACTGATAGATGCCGAAA CCACCGCAGCAGCCTGGCCTAACGTGGCCAAGGTCTCTGTGACTGGGCGGAAGCGGAGCC GGGCCGCCCCTGCCGAGCCCCCGGAGGCTCCTGATGCCACTGCTGCAGGAGGCGCGACCT CGAAGCAGATGGTGCGTGTGCTGGAGCGGGTGTGCACCACCCTCCTGGGCCTGGAGGACC AGCTGAATGCCCTGGACCGCGCTGCCGGCGACGGGGACTGCGGCACCACCCACAGCCGTG CTGCCAGAGCGATTCAGGGCTGGCTGAAGGAGAGCCCACCACCCGCCAGTCCTGCCCAGC TACTCTCCAAATTGTCCCTCCTGCTACTGGAGAAGATGGGAGGCTCATCCGGGGCACTCT ATGGCCTGTTCCTGACTGCGGCGGCCCAGCCGCTCAAGGCCAAGACTGACCTCGCAGCCT GGTCTGCTGCCATGGATGCCGGCCTGGAGGCCATGCAGAAGTACGGAAAGGCTGCCCCAG GGGACAGGACTATGCTGGATTCCCTGTGGGCAGCAGGACAGGAGCTCCAAGCCTGGAAGA GCCCGGGGGCTAACCTGCTCCCAGTCCTGACCAAGGCAGTCAAGAACGCAGAGGCTGCAG CTGAAGCCACCAAGAACATGGAAGCTGGAGCTGGAAGAGCCAGTTATATCAGCTCTGCGC GGCTGGATCAGCCAGACCCCGGGGCAGTGGCGGCCGCTGCCATTCTCCGCGCCATCCTGG AGGTTCTGCAGAGCCAGGGGGCATGAAAGCCTCCCTGGGGCTCAGTGCCTCCCATTGCTG TGCACAGTGGCCACTGTCACTTATTTCTGCCTTCCAACTGTCGCCCTCCCCTGCCTACCC TCAGGGCCAGTCCTCTGAGTTCAGCAGGAATCCCTCAGGCAGCGTCCAGAATTACTCCAC TGTAGACACTGCAGGCTCCAGTAGGTCACTACCCCTTCCCTCTTCAGGCAAGGTGGAGTC TCGGGTCACCCGGCTGTCCCCAGCCAACCCTGGGCTTCCGTGATAAGGCCTTTCTGTGGG TGACAGCACAGCCCTTAACGGGCAACGCGAATTTGGTTTTAAGACTCCCCGTGAAAGGCC TTCTGTACCTGAGCTGAGCCAGTGTGGAAAAGCAAGTCAATAAACACACGGAAGCCAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 763-994, - strand, RNAz p=0.813885 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 763-994, - strand, RNAz p=0.813885 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 54-174, gnl|bosTau2|chr29 (30909572-30909692) | |
| 54-174, gnl|canFam2|chr18 (58084160-58084064) | |
| 54-174, gnl|danRer3|chr7 (9762930-9762845) | |
| 54-174, gnl|echTel1|scaffold_299327 (4577-4673) | |
| 54-174, gnl|fr1|chrUn (269169959-269170053) | |
| 54-174, gnl|hg17|chr11 (60867377-60867473) | |
| 54-174, gnl|Hg17|chr11 (60867389-60867509) | |
| 54-174, gnl|loxAfr1|scaffold_45925 (525-621) | |
| 54-174, gnl|mm7|chr19 (10275549-10275454) | |
| 54-174, gnl|Mm7|chr19 (10275536-10275416) | |
| 54-174, gnl|monDom2|scaffold_33 (28367019-28367114) | |
| 54-174, gnl|oryCun1|scaffold_205944 (68102-68198) | |
| 54-174, gnl|panTro1|chr9 (61789871-61789967) | |
| 54-174, gnl|rheMac2|chr14 (12740489-12740393) | |
| 54-174, gnl|rn3|chr1 (213243334-213243239) | |
| 54-174, gnl|tetNig1|chrUn_random (12906546-12906462) | |
| 54-174, gnl|xenTro1|scaffold_357 (169633-169719) | |
| 268-429, gnl|bosTau2|chr29 (30910282-30910442) | |
| 268-429, gnl|Hg17|chr11 (60868161-60868321) | |
| 268-429, gnl|Mm7|chr19 (10274713-10274556) | |
| 537-642, gnl|bosTau2|chr29 (30911548-30911653) | |
| 537-642, gnl|canFam2|chr18 (58082085-58081949) | |
| 537-642, gnl|danRer3|chr7 (9755686-9755555) | |
| 537-642, gnl|echTel1|scaffold_299327 (6307-6442) | |
| 537-642, gnl|fr1|chrUn (269171166-269171293) | |
| 537-642, gnl|galGal2|chrUn (163443427-163443291) | |
| 537-642, gnl|hg17|chr11 (60869485-60869621) | |
| 537-642, gnl|Hg17|chr11 (60869510-60869615) | |
| 537-642, gnl|loxAfr1|scaffold_45925 (2590-2728) | |
| 537-642, gnl|mm7|chr19 (10273719-10273583) | |
| 537-642, gnl|Mm7|chr19 (10273692-10273587) | |
| 537-642, gnl|monDom2|scaffold_33 (28368209-28368347) | |
| 537-642, gnl|oryCun1|scaffold_205944 (69898-70035) | |
| 537-642, gnl|panTro1|chr9 (61791978-61792114) | |
| 537-642, gnl|rheMac2|chr14 (12738283-12738147) | |
| 537-642, gnl|rn3|chr1 (213241599-213241463) | |
| 537-642, gnl|tetNig1|chrUn_random (12905351-12905228) | |
| 537-642, gnl|xenTro1|scaffold_357 (171179-171323) | |
| 763-1315, gnl|bosTau2|chr29 (30912345-30912902) | |
| 763-1315, gnl|Hg17|chr11 (60870397-60870964) | |
| 763-1315, gnl|Mm7|chr19 (10272916-10272326) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-174, gnl|bosTau2|chr29 (30909572-30909692) | |
| 54-174, gnl|canFam2|chr18 (58084160-58084064) | |
| 54-174, gnl|danRer3|chr7 (9762930-9762845) | |
| 54-174, gnl|echTel1|scaffold_299327 (4577-4673) | |
| 54-174, gnl|fr1|chrUn (269169959-269170053) | |
| 54-174, gnl|hg17|chr11 (60867377-60867473) | |
| 54-174, gnl|Hg17|chr11 (60867389-60867509) | |
| 54-174, gnl|loxAfr1|scaffold_45925 (525-621) | |
| 54-174, gnl|mm7|chr19 (10275549-10275454) | |
| 54-174, gnl|Mm7|chr19 (10275536-10275416) | |
| 54-174, gnl|monDom2|scaffold_33 (28367019-28367114) | |
| 54-174, gnl|oryCun1|scaffold_205944 (68102-68198) | |
| 54-174, gnl|panTro1|chr9 (61789871-61789967) | |
| 54-174, gnl|rheMac2|chr14 (12740489-12740393) | |
| 54-174, gnl|rn3|chr1 (213243334-213243239) | |
| 54-174, gnl|tetNig1|chrUn_random (12906546-12906462) | |
| 54-174, gnl|xenTro1|scaffold_357 (169633-169719) | |
| 268-429, gnl|bosTau2|chr29 (30910282-30910442) | |
| 268-429, gnl|Hg17|chr11 (60868161-60868321) | |
| 268-429, gnl|Mm7|chr19 (10274713-10274556) | |
| 537-642, gnl|bosTau2|chr29 (30911548-30911653) | |
| 537-642, gnl|canFam2|chr18 (58082085-58081949) | |
| 537-642, gnl|danRer3|chr7 (9755686-9755555) | |
| 537-642, gnl|echTel1|scaffold_299327 (6307-6442) | |
| 537-642, gnl|fr1|chrUn (269171166-269171293) | |
| 537-642, gnl|galGal2|chrUn (163443427-163443291) | |
| 537-642, gnl|hg17|chr11 (60869485-60869621) | |
| 537-642, gnl|Hg17|chr11 (60869510-60869615) | |
| 537-642, gnl|loxAfr1|scaffold_45925 (2590-2728) | |
| 537-642, gnl|mm7|chr19 (10273719-10273583) | |
| 537-642, gnl|Mm7|chr19 (10273692-10273587) | |
| 537-642, gnl|monDom2|scaffold_33 (28368209-28368347) | |
| 537-642, gnl|oryCun1|scaffold_205944 (69898-70035) | |
| 537-642, gnl|panTro1|chr9 (61791978-61792114) | |
| 537-642, gnl|rheMac2|chr14 (12738283-12738147) | |
| 537-642, gnl|rn3|chr1 (213241599-213241463) | |
| 537-642, gnl|tetNig1|chrUn_random (12905351-12905228) | |
| 537-642, gnl|xenTro1|scaffold_357 (171179-171323) | |
| 763-1315, gnl|bosTau2|chr29 (30912345-30912902) | |
| 763-1315, gnl|Hg17|chr11 (60870397-60870964) | |
| 763-1315, gnl|Mm7|chr19 (10272916-10272326) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| duo (0.345602) | |
| fce (0.271592) | |
| fli (0.202881) | |
| fhi (0.169578) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.345602) | |
| fce (0.271592) | |
| fli (0.202881) | |
| fhi (0.169578) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |