Non-Coding RNA Search

Ss1.1-Mixc-0026p09.3

Sequence:


               
               AGCCTGGAGCAGGAGGAAGGGGAGACGGCGCGCAAACTGGAGTTGAATCACGACGCGCTC
ATCCAGCAGAGCCGGGTCCTGTGGCGGATGATCGCGGAGCTGGAGGACAGGTCTCAGAGG
CCCGTCCGCTGGATGCTGCAGGGCATCCAGGACGTCTTAAACAGGAGCCAGTCCTGGAGG
TTGCAGCGACCCGAACCCGTCTCGCTGGAGCTGAAGACAGACTGCCGAGTGCCGGGGCTG
CGAGAGATCCTGAAGACGTTTGCAGCGGACGTGCGCCTGGATCCGGACACGGCTTATTCT
CGCCTCATCGTGTCTGAGGACAGAAAATGCGTGCGCTACGGAGACACCAAGCAGAAACTG
CCCGACAATCCTGAGCGGTTTTACCGCTACAACATCGTGCTGGGCAGCCAGTGCATCTCC
TCGGGCCGGCACTACTGGGAGGTGGAGGTGGGAGACAGGTCCGAGTGGGGCCTGGGGGTG
TGCAGGGAGAGCGTCGACCGGAAGGAGGTGGTCTACTTGTCCCCCCACTACGGCTTCTGG
GTGATCAGGCTGCGGAAGGGCAGTGAGTACCGGGCGGGCACCGACGAGTACCCGCTCCTG
TCGCTGCCTGTGCCGCCCCGCCGGGTGGGGGTCTTCCTGGATTACGAGGCCCACGACATC
TCCTTCTACAACGTGACCGACAACGGCGCCCACATTTTTACTTTCCCCCACTACCCCTTC
CCTGGGCGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTGGAGCAGGAGGAAGGGGAGACGGCGCGCAAACTGGAGTTGAATCACGACGCGCTC
ATCCAGCAGAGCCGGGTCCTGTGGCGGATGATCGCGGAGCTGGAGGACAGGTCTCAGAGG
CCCGTCCGCTGGATGCTGCAGGGCATCCAGGACGTCTTAAACAGGAGCCAGTCCTGGAGG
TTGCAGCGACCCGAACCCGTCTCGCTGGAGCTGAAGACAGACTGCCGAGTGCCGGGGCTG
CGAGAGATCCTGAAGACGTTTGCAGCGGACGTGCGCCTGGATCCGGACACGGCTTATTCT
CGCCTCATCGTGTCTGAGGACAGAAAATGCGTGCGCTACGGAGACACCAAGCAGAAACTG
CCCGACAATCCTGAGCGGTTTTACCGCTACAACATCGTGCTGGGCAGCCAGTGCATCTCC
TCGGGCCGGCACTACTGGGAGGTGGAGGTGGGAGACAGGTCCGAGTGGGGCCTGGGGGTG
TGCAGGGAGAGCGTCGACCGGAAGGAGGTGGTCTACTTGTCCCCCCACTACGGCTTCTGG
GTGATCAGGCTGCGGAAGGGCAGTGAGTACCGGGCGGGCACCGACGAGTACCCGCTCCTG
TCGCTGCCTGTGCCGCCCCGCCGGGTGGGGGTCTTCCTGGATTACGAGGCCCACGACATC
TCCTTCTACAACGTGACCGACAACGGCGCCCACATTTTTACTTTCCCCCACTACCCCTTC
CCTGGGCGCCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7022357|dbj|BAA91569.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7022357|dbj|BAA91569.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               25-142, + strand, RNAz p=0.515644

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-142, + strand, RNAz p=0.515644

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF439153, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF439153, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-142, gnl|bosTau2|chr15 (32067819-32067960)
               

               
               1-142, gnl|canFam2|chr21 (29991088-29991209)
               

               
               1-142, gnl|dasNov1|scaffold_39459 (10404-10283)
               

               
               1-142, gnl|echTel1|scaffold_58151 (578-729)
               

               
               1-142, gnl|galGal2|chr16 (126569-126657)
               

               
               1-142, gnl|hg17|chr11 (4579951-4580072)
               

               
               1-142, gnl|Hg17|chr11 (4580098-4579957)
               

               
               1-142, gnl|loxAfr1|scaffold_46639 (840-719)
               

               
               1-142, gnl|mm7|chr7 (98729556-98729671)
               

               
               1-142, gnl|Mm7|chr7 (98729703-98729562)
               

               
               1-142, gnl|monDom2|scaffold_66 (8914686-8914565)
               

               
               1-142, gnl|oryCun1|scaffold_172266 (6373-6464)
               

               
               1-142, gnl|panTro1|chr9 (4675361-4675482)
               

               
               1-142, gnl|rheMac2|chr14 (69109201-69109080)
               

               
               1-142, gnl|rn3|chr10 (44524248-44524154)
               


               
               261-731, gnl|bosTau2|chr15 (32321263-32321733)
               

               
               261-731, gnl|Hg17|chr11 (4363664-4363194)
               

               
               261-731, gnl|Mm7|chr7 (98610001-98609534)
               


               
               263-727, gnl|bosTau2|chr12 (1728115-1728573)
               

               
               263-727, gnl|Hg17|chr6 (26616705-26617163)
               

               
               263-727, gnl|Mm7|chr13 (22825359-22824901)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-142, gnl|bosTau2|chr15 (32067819-32067960)
               

               
               1-142, gnl|canFam2|chr21 (29991088-29991209)
               

               
               1-142, gnl|dasNov1|scaffold_39459 (10404-10283)
               

               
               1-142, gnl|echTel1|scaffold_58151 (578-729)
               

               
               1-142, gnl|galGal2|chr16 (126569-126657)
               

               
               1-142, gnl|hg17|chr11 (4579951-4580072)
               

               
               1-142, gnl|Hg17|chr11 (4580098-4579957)
               

               
               1-142, gnl|loxAfr1|scaffold_46639 (840-719)
               

               
               1-142, gnl|mm7|chr7 (98729556-98729671)
               

               
               1-142, gnl|Mm7|chr7 (98729703-98729562)
               

               
               1-142, gnl|monDom2|scaffold_66 (8914686-8914565)
               

               
               1-142, gnl|oryCun1|scaffold_172266 (6373-6464)
               

               
               1-142, gnl|panTro1|chr9 (4675361-4675482)
               

               
               1-142, gnl|rheMac2|chr14 (69109201-69109080)
               

               
               1-142, gnl|rn3|chr10 (44524248-44524154)
               


               
               261-731, gnl|bosTau2|chr15 (32321263-32321733)
               

               
               261-731, gnl|Hg17|chr11 (4363664-4363194)
               

               
               261-731, gnl|Mm7|chr7 (98610001-98609534)
               


               
               263-727, gnl|bosTau2|chr12 (1728115-1728573)
               

               
               263-727, gnl|Hg17|chr6 (26616705-26617163)
               

               
               263-727, gnl|Mm7|chr13 (22825359-22824901)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-142, gnl\|bosTau2\|chr15 (32067819-32067960)
	1-142, gnl\|canFam2\|chr21 (29991088-29991209)
	1-142, gnl\|dasNov1\|scaffold_39459 (10404-10283)
	1-142, gnl\|echTel1\|scaffold_58151 (578-729)
	1-142, gnl\|galGal2\|chr16 (126569-126657)
	1-142, gnl\|hg17\|chr11 (4579951-4580072)
	1-142, gnl\|Hg17\|chr11 (4580098-4579957)
	1-142, gnl\|loxAfr1\|scaffold_46639 (840-719)
	1-142, gnl\|mm7\|chr7 (98729556-98729671)
	1-142, gnl\|Mm7\|chr7 (98729703-98729562)
	1-142, gnl\|monDom2\|scaffold_66 (8914686-8914565)
	1-142, gnl\|oryCun1\|scaffold_172266 (6373-6464)
	1-142, gnl\|panTro1\|chr9 (4675361-4675482)
	1-142, gnl\|rheMac2\|chr14 (69109201-69109080)
	1-142, gnl\|rn3\|chr10 (44524248-44524154)

	261-731, gnl\|bosTau2\|chr15 (32321263-32321733)
	261-731, gnl\|Hg17\|chr11 (4363664-4363194)
	261-731, gnl\|Mm7\|chr7 (98610001-98609534)

	263-727, gnl\|bosTau2\|chr12 (1728115-1728573)
	263-727, gnl\|Hg17\|chr6 (26616705-26617163)
	263-727, gnl\|Mm7\|chr13 (22825359-22824901)