Ss1.1-Mixc-0027c05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGGGAGCTGGGGAGAGGGGCACCCAGCTGGCGGCTCGGGCAGAGGAGCAGCACCATG ACCGGCAAGAAAGTCTGCATTGTAGGCTCTGGCAACTGGGGCTCAGCCATCGCCAAGATC GTGGGTGGCAATGCAGGCCGGCTGGCACACTTTGACCCACGGGTGACGATGTGGGTGTTT GAGGAAGACGTGGGGGGCAGAAAGCTGACAGAGATCATCAACACACAGCATGAGAACGTC AAATACCTGCCAGGGCACAAGCTGCCCCCCAATGTGGTGGCTGTCCCAGATGTGGTCCAG GCCTCAGCGGATGCTGACATCCTGATCTTTGTGGTGCCACATCAGTTCATCGGCAAGATC TGTGATCAGCTCAAGGGCCACCTGAAGGCAGATGCCATCGGCCTATCTCTTATTAAGGGG GTAGACGAGGGCCCCGACGGGCTGAAGCTCATCTCTGAAGTGATTGGGGAGCGCCTTGGC ATCCCCATGAGCGTGCTGATGGGGGCCAACATTGCCAATGAGGTGGCTGATGAGAAGTTC TGTGAGACAACCATCGGCTGCAAGGACCTGGCCCAGGGACAGCTTCTGAAGGAGTTGATG CAGACACCCAATTTCCGTGTCACGGTGGTGCAGGAGGTGGACACAGTAGAGATCTGCGGG GCCTTAAAGAATATAGTGGCCGTGGGGGCTGGCTTCTGTGATGGGCTGGGCTTTGGCGAC AACACCAAGGCGGCGGTGATCCGACTGGGGCTCATGGAGATGATTGCCTTCGCCAAGCTC TTCTGCCACGGCCCCGTGTCCTCCGCCACCTTCCTGGAGAGCTGCGGCATCGCCGACCTC ATCACGACCTGTTACGGAGGGCGGAACCGCAAGGTGGCCGAGGCCTTCGCCCGCACAGGA AAGTCCATTGAGCAGCTGGAGAAAGAGATGCTGAATGGACAGAAGCTGCAGGGGCCCCAG ACAGCCCAGGAGCTGCACAGCATCCTCCAGCACAAGGGCCTGGTGGACAAGTTCCCTCTG TTCATGGCTGTGTACAAGATATGCTACGAGAACCACCCAGTCAGTGAGTTCATCTGCTGC CTGCAGAATCATCCAGAACATAGCTGAGCGGTGCTGGGGCTGAGGCCAGGCAGCCTCTTT ACACCAATGGAGACAGGCAGAAGCTTGGGGTGCCTGGCCAACAGGATCTCTGGGACTCCA CACGGAGGAGCCTCTTCTCAGCTTCTCACCGGAGGACAGGAGGCTGGGGCCCAGCTACCT GCCTGGAGATCCTGAAGCACCAAGCAGCCCGCAGCCTCTTGCCGCCACATCTCACCAGAA ATGGAGTTGCCTGGTCCCTCTCTGGCTGTGGGGAGGGGCAGACTCAAGCCCAGCTCTGGC TGCTTTGAGTATGTGGGGGGAGCGGGGCGGGGGAAGCAGGGAGGCAAGGCAACGGCCGTC CACTGCTGCCTCACACAGACCAGGAGTCCTGTCCCCAAGCCCAGTTACTGGCTAAAGAAG TACCTCAGCTGCAAGAGGGATGAGGCAAAGGCTGCCAGGGAGGGGTCCGGGCTTTTGAGC TGACTCAAGCCCCAGGGACCCCTTTGCTCTGACCTCTGCCAGGCCCCACATGGCATCAAT GAATCTCAGTGTTTGTTAACAAAATACAAAGATCTCAAACAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGGGAGCTGGGGAGAGGGGCACCCAGCTGGCGGCTCGGGCAGAGGAGCAGCACCATG ACCGGCAAGAAAGTCTGCATTGTAGGCTCTGGCAACTGGGGCTCAGCCATCGCCAAGATC GTGGGTGGCAATGCAGGCCGGCTGGCACACTTTGACCCACGGGTGACGATGTGGGTGTTT GAGGAAGACGTGGGGGGCAGAAAGCTGACAGAGATCATCAACACACAGCATGAGAACGTC AAATACCTGCCAGGGCACAAGCTGCCCCCCAATGTGGTGGCTGTCCCAGATGTGGTCCAG GCCTCAGCGGATGCTGACATCCTGATCTTTGTGGTGCCACATCAGTTCATCGGCAAGATC TGTGATCAGCTCAAGGGCCACCTGAAGGCAGATGCCATCGGCCTATCTCTTATTAAGGGG GTAGACGAGGGCCCCGACGGGCTGAAGCTCATCTCTGAAGTGATTGGGGAGCGCCTTGGC ATCCCCATGAGCGTGCTGATGGGGGCCAACATTGCCAATGAGGTGGCTGATGAGAAGTTC TGTGAGACAACCATCGGCTGCAAGGACCTGGCCCAGGGACAGCTTCTGAAGGAGTTGATG CAGACACCCAATTTCCGTGTCACGGTGGTGCAGGAGGTGGACACAGTAGAGATCTGCGGG GCCTTAAAGAATATAGTGGCCGTGGGGGCTGGCTTCTGTGATGGGCTGGGCTTTGGCGAC AACACCAAGGCGGCGGTGATCCGACTGGGGCTCATGGAGATGATTGCCTTCGCCAAGCTC TTCTGCCACGGCCCCGTGTCCTCCGCCACCTTCCTGGAGAGCTGCGGCATCGCCGACCTC ATCACGACCTGTTACGGAGGGCGGAACCGCAAGGTGGCCGAGGCCTTCGCCCGCACAGGA AAGTCCATTGAGCAGCTGGAGAAAGAGATGCTGAATGGACAGAAGCTGCAGGGGCCCCAG ACAGCCCAGGAGCTGCACAGCATCCTCCAGCACAAGGGCCTGGTGGACAAGTTCCCTCTG TTCATGGCTGTGTACAAGATATGCTACGAGAACCACCCAGTCAGTGAGTTCATCTGCTGC CTGCAGAATCATCCAGAACATAGCTGAGCGGTGCTGGGGCTGAGGCCAGGCAGCCTCTTT ACACCAATGGAGACAGGCAGAAGCTTGGGGTGCCTGGCCAACAGGATCTCTGGGACTCCA CACGGAGGAGCCTCTTCTCAGCTTCTCACCGGAGGACAGGAGGCTGGGGCCCAGCTACCT GCCTGGAGATCCTGAAGCACCAAGCAGCCCGCAGCCTCTTGCCGCCACATCTCACCAGAA ATGGAGTTGCCTGGTCCCTCTCTGGCTGTGGGGAGGGGCAGACTCAAGCCCAGCTCTGGC TGCTTTGAGTATGTGGGGGGAGCGGGGCGGGGGAAGCAGGGAGGCAAGGCAACGGCCGTC CACTGCTGCCTCACACAGACCAGGAGTCCTGTCCCCAAGCCCAGTTACTGGCTAAAGAAG TACCTCAGCTGCAAGAGGGATGAGGCAAAGGCTGCCAGGGAGGGGTCCGGGCTTTTGAGC TGACTCAAGCCCCAGGGACCCCTTTGCTCTGACCTCTGCCAGGCCCCACATGGCATCAAT GAATCTCAGTGTTTGTTAACAAAATACAAAGATCTCAAACAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 162-1609, - strand, RNAz p=0.981295 | |
| 1090-1342, + strand, RNAz p=0.998542 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 162-1609, - strand, RNAz p=0.981295 | |
| 1090-1342, + strand, RNAz p=0.998542 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_005276, + |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 98-279, gnl|bosTau2|chr5 (23029123-23028942) | |
| 98-279, gnl|canFam2|chr27 (7627709-7627488) | |
| 98-279, gnl|danRer3|chr22 (6738140-6737937) | |
| 98-279, gnl|dasNov1|scaffold_120066 (3156-3381) | |
| 98-279, gnl|echTel1|scaffold_306440 (2004-2243) | |
| 98-279, gnl|fr1|chrUn (115321531-115321318) | |
| 98-279, gnl|galGal2|chrUn (6366055-6365846) | |
| 98-279, gnl|hg17|chr12 (48784599-48784820) | |
| 98-279, gnl|Hg17|chr12 (48784623-48784804) | |
| 98-279, gnl|loxAfr1|scaffold_456 (46926-47164) | |
| 98-279, gnl|mm7|chr15 (99703372-99703593) | |
| 98-279, gnl|Mm7|chr15 (99703396-99703577) | |
| 98-279, gnl|oryCun1|scaffold_183724 (3574-3783) | |
| 98-279, gnl|panTro1|chr10 (49969980-49970201) | |
| 98-279, gnl|rheMac2|chr11 (47230628-47230849) | |
| 98-279, gnl|rn3|chr7 (138535851-138536071) | |
| 98-279, gnl|tetNig1|chr11 (7352400-7352607) | |
| 98-279, gnl|xenTro1|scaffold_312 (294141-293956) | |
| 416-557, gnl|bosTau2|chr5 (23027428-23027287) | |
| 416-557, gnl|Hg17|chr12 (48786336-48786477) | |
| 416-557, gnl|Mm7|chr15 (99705339-99705480) | |
| 668-903, gnl|bosTau2|chr22 (10645010-10645245) | |
| 668-903, gnl|canFam2|chr23 (15620770-15620521) | |
| 668-903, gnl|danRer3|chr16 (41682430-41682678) | |
| 668-903, gnl|dasNov1|scaffold_22937 (20250-20498) | |
| 668-903, gnl|echTel1|scaffold_322305 (128130-128375) | |
| 668-903, gnl|fr1|chrUn (115320202-115319950) | |
| 668-903, gnl|galGal2|chr2 (39450606-39450852) | |
| 668-903, gnl|hg17|chr3 (32175363-32175612) | |
| 668-903, gnl|Hg17|chr3 (32175370-32175605) | |
| 668-903, gnl|loxAfr1|scaffold_37552 (8911-9149) | |
| 668-903, gnl|mm7|chr9 (114556112-114555866) | |
| 668-903, gnl|Mm7|chr9 (114556106-114555871) | |
| 668-903, gnl|monDom2|scaffold_7 (87788891-87789139) | |
| 668-903, gnl|oryCun1|scaffold_179589 (5601-5848) | |
| 668-903, gnl|panTro1|chr10 (49973002-49973216) | |
| 668-903, gnl|rheMac2|chr2 (174633571-174633820) | |
| 668-903, gnl|rn3|chr8 (119339872-119339623) | |
| 668-903, gnl|tetNig1|chr9 (7627307-7627059) | |
| 668-903, gnl|xenTro1|scaffold_1152 (218729-218967) | |
| 1011-1342, gnl|bosTau2|chr5 (23024758-23024434) | |
| 1011-1342, gnl|Hg17|chr12 (48789473-48789804) | |
| 1503-1662, gnl|bosTau2|chr5 (23024279-23024120) | |
| 1503-1662, gnl|Hg17|chr12 (48789970-48790138) | |
| 1503-1662, gnl|Mm7|chr15 (99708882-99709039) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-279, gnl|bosTau2|chr5 (23029123-23028942) | |
| 98-279, gnl|canFam2|chr27 (7627709-7627488) | |
| 98-279, gnl|danRer3|chr22 (6738140-6737937) | |
| 98-279, gnl|dasNov1|scaffold_120066 (3156-3381) | |
| 98-279, gnl|echTel1|scaffold_306440 (2004-2243) | |
| 98-279, gnl|fr1|chrUn (115321531-115321318) | |
| 98-279, gnl|galGal2|chrUn (6366055-6365846) | |
| 98-279, gnl|hg17|chr12 (48784599-48784820) | |
| 98-279, gnl|Hg17|chr12 (48784623-48784804) | |
| 98-279, gnl|loxAfr1|scaffold_456 (46926-47164) | |
| 98-279, gnl|mm7|chr15 (99703372-99703593) | |
| 98-279, gnl|Mm7|chr15 (99703396-99703577) | |
| 98-279, gnl|oryCun1|scaffold_183724 (3574-3783) | |
| 98-279, gnl|panTro1|chr10 (49969980-49970201) | |
| 98-279, gnl|rheMac2|chr11 (47230628-47230849) | |
| 98-279, gnl|rn3|chr7 (138535851-138536071) | |
| 98-279, gnl|tetNig1|chr11 (7352400-7352607) | |
| 98-279, gnl|xenTro1|scaffold_312 (294141-293956) | |
| 416-557, gnl|bosTau2|chr5 (23027428-23027287) | |
| 416-557, gnl|Hg17|chr12 (48786336-48786477) | |
| 416-557, gnl|Mm7|chr15 (99705339-99705480) | |
| 668-903, gnl|bosTau2|chr22 (10645010-10645245) | |
| 668-903, gnl|canFam2|chr23 (15620770-15620521) | |
| 668-903, gnl|danRer3|chr16 (41682430-41682678) | |
| 668-903, gnl|dasNov1|scaffold_22937 (20250-20498) | |
| 668-903, gnl|echTel1|scaffold_322305 (128130-128375) | |
| 668-903, gnl|fr1|chrUn (115320202-115319950) | |
| 668-903, gnl|galGal2|chr2 (39450606-39450852) | |
| 668-903, gnl|hg17|chr3 (32175363-32175612) | |
| 668-903, gnl|Hg17|chr3 (32175370-32175605) | |
| 668-903, gnl|loxAfr1|scaffold_37552 (8911-9149) | |
| 668-903, gnl|mm7|chr9 (114556112-114555866) | |
| 668-903, gnl|Mm7|chr9 (114556106-114555871) | |
| 668-903, gnl|monDom2|scaffold_7 (87788891-87789139) | |
| 668-903, gnl|oryCun1|scaffold_179589 (5601-5848) | |
| 668-903, gnl|panTro1|chr10 (49973002-49973216) | |
| 668-903, gnl|rheMac2|chr2 (174633571-174633820) | |
| 668-903, gnl|rn3|chr8 (119339872-119339623) | |
| 668-903, gnl|tetNig1|chr9 (7627307-7627059) | |
| 668-903, gnl|xenTro1|scaffold_1152 (218729-218967) | |
| 1011-1342, gnl|bosTau2|chr5 (23024758-23024434) | |
| 1011-1342, gnl|Hg17|chr12 (48789473-48789804) | |
| 1503-1662, gnl|bosTau2|chr5 (23024279-23024120) | |
| 1503-1662, gnl|Hg17|chr12 (48789970-48790138) | |
| 1503-1662, gnl|Mm7|chr15 (99708882-99709039) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| mas (0.84122) | |
| fbs (0.350693) | |
| fce (0.271592) | |
| med (0.232504) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.84122) | |
| fbs (0.350693) | |
| fce (0.271592) | |
| med (0.232504) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |