Non-Coding RNA Search

Ss1.1-Mixc-0027d08.5

Sequence:


               
               TTTAGGAGGTTATTCTATCCAATTCCCAGCAGTGGAGAGAACATTAAACTTGTGTCTCAA
GGTTTCATGGTTTTCCCACATTCTTTGGCTATTTAATTTTCCAGGTTAAATAATTGAAGC
AAGGACTGAGTTGACGTAACCTTGAGTTGAGAAAAAAAACCTTATTTGGCAGAGCTGGGC
TTGGTAGTGAAATTTTAGTGTAATGTGTTTTTTTTCTTGTGGTAATTGAAAGGGGAAAGA
TAATTTGGGTTTTTCTGTAAGGGAAAAGAAAGTATGTATTTAACTTTGGCTCTGATCAAA
TTGTTCTTAATATAGGCAAAAATTCTTTAAGTATCTTAAGTCTTCATGAAAATGTAGTAA
TAAAGTATATGAAGTTTGTTTTGTTTTTGTTTTTGTTTTCATTTTGCTCTGTGACTGGTT
TGAAGGTAAGTTTGTTATATTACTGGTAGATTTTGCCAGGCTTCTCCCAACAGAGTAGAA
GTGATTTGGCCTTGTAACCACACCTTCTACATCCCAGTTTTTGAAAAGGACGAACTGGAA
TCTGGTACGACTCCTGTTGCATATTGGTTATGATAACAGAAGAGGCAGGAGTTTGGATGG
TTGAATGGGATTCCCTTAGGATTTTACAGCTGATAAAGATGCCATTTCCTCTGCATGTCC
CAAGCATCATTAATCCTCTTTTACTCTGTTGGGATGAGTCTTTTTTTGTTCCTGTTCAGA
GTGGTTACTAACTTAATCTTCTCTCCTCTGCTGTCACCTGCATTCGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAGGAGGTTATTCTATCCAATTCCCAGCAGTGGAGAGAACATTAAACTTGTGTCTCAA
GGTTTCATGGTTTTCCCACATTCTTTGGCTATTTAATTTTCCAGGTTAAATAATTGAAGC
AAGGACTGAGTTGACGTAACCTTGAGTTGAGAAAAAAAACCTTATTTGGCAGAGCTGGGC
TTGGTAGTGAAATTTTAGTGTAATGTGTTTTTTTTCTTGTGGTAATTGAAAGGGGAAAGA
TAATTTGGGTTTTTCTGTAAGGGAAAAGAAAGTATGTATTTAACTTTGGCTCTGATCAAA
TTGTTCTTAATATAGGCAAAAATTCTTTAAGTATCTTAAGTCTTCATGAAAATGTAGTAA
TAAAGTATATGAAGTTTGTTTTGTTTTTGTTTTTGTTTTCATTTTGCTCTGTGACTGGTT
TGAAGGTAAGTTTGTTATATTACTGGTAGATTTTGCCAGGCTTCTCCCAACAGAGTAGAA
GTGATTTGGCCTTGTAACCACACCTTCTACATCCCAGTTTTTGAAAAGGACGAACTGGAA
TCTGGTACGACTCCTGTTGCATATTGGTTATGATAACAGAAGAGGCAGGAGTTTGGATGG
TTGAATGGGATTCCCTTAGGATTTTACAGCTGATAAAGATGCCATTTCCTCTGCATGTCC
CAAGCATCATTAATCCTCTTTTACTCTGTTGGGATGAGTCTTTTTTTGTTCCTGTTCAGA
GTGGTTACTAACTTAATCTTCTCTCCTCTGCTGTCACCTGCATTCGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               500-591, - strand, RNAz p=0.993513

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               500-591, - strand, RNAz p=0.993513

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               447-532, + strand, RNAmicro p=0.999809

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               447-532, + strand, RNAmicro p=0.999809

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr5 (68018965-68019756)
               

               
               1-768, gnl|Hg17|chr22 (37209523-37208705)
               

               
               1-768, gnl|Mm7|chr15 (79616902-79616127)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr5 (68018965-68019756)
               

               
               1-768, gnl|Hg17|chr22 (37209523-37208705)
               

               
               1-768, gnl|Mm7|chr15 (79616902-79616127)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               lnt (0.142308)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               lnt (0.142308)

	1-768, gnl\|bosTau2\|chr5 (68018965-68019756)
	1-768, gnl\|Hg17\|chr22 (37209523-37208705)
	1-768, gnl\|Mm7\|chr15 (79616902-79616127)